| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6864 |
|---|
| Symbol | |
|---|
| ID | 8363056 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 8594961 |
|---|
| End bp | 8597423 |
|---|
| Gene Length | 2463 bp |
|---|
| Protein Length | 820 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644968997 |
|---|
| Product | DEAD/H associated domain protein |
|---|
| Protein accession | YP_003126466 |
|---|
| Protein GI | 256425813 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.141518 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACA AAGCGCGCGG ATGGCAGGTG ATCATAGAAT GGCTGGCTGC AAGAGACAGA
AAGCCCTTTA CATTCCAGGA AGAAGCCTGG AAACATTACA TGCAGGGCAA ATCAGGCCTT
GTCAACGCCC CTACCGGTTA CGGTAAAACC TTCTCACTTT TCCTGGGTGT TGTAATCGAC
TGGATCAATA AACATCCGGA TGATTACCAA GAGAAAACAA AGAACGGTCT GCAAATGCTG
TGGATCACTC CGCTACGTGC ACTGGCAAAA GATATTGCCC GCGCCATGGA GGAAGTACTG
CAGGAACTCA ATATGCCCTG GCAGGTAGGC ATCCGCAGTG GAGATACGCC CATATCTACC
CGGCAGCAGC AAAAGAAGAT GATGCCGGAG ATCCTGCTTA TTACACCGGA AAGTCTGCAC
CTCCTGATGG GGCAAAAAGA ATATCCCAAG GTATTTACAC ACCTGACGAC CGTCGTGGCG
GATGAATGGC ATGAATTGCT GGGCAGCAAA CGCGGCGTTA TGGTGGAACT GGGTCTCAGC
AGACTCCGTG GACTGGCGAA AAAGGCAGGT CGTCCGCCAC TGAAGGTATG GGGTATATCT
GCAACGATTG GCAACCTGGA TGAAGCGCTG GATGTACTGC TCGGTCAGCC GGATCCGGAA
GCTGTCATTA TACGCGCCAA ACTGGATAAG AAGATCGAAC TACAGAGCAT CTTACCCGAT
GAAATTGAGA AATTCCCTTG GGCAGGTCAC TTAGGCACCA AGCTGCTGTA TAAAGCGCTG
CCGGTGATCA TGAACAGCAA AACGACACTT ATATTCACCA ATGTCCGTTC CCAGACGGAG
ATCTGGTACC AGGAAATTTT AAGGCAATGC CCCGAACTGG CAGGCGCTAT TGCGATTCAC
CATGGTTCCA TTGATATGGA ACTACGTGTG TGGGTGGAAG AAGCGCTGCA TACCGGCGTA
CTGAAAGCGG TGGTGTGTAC CTCCAGCCTT GACCTGGGCG TAGACTTCCG TCCGGTAGAT
ACCGTTATCC AGGTCGGCAG TCCGAAAGGA GTTGCCCGTT TCCTCCAACG CGCAGGCCGA
AGCGGTCACC AGCCAGGAGC TACCAGTAAA ATATGGTTCC TTCCCACCCA CAGTCTTGAA
CTGGTAGAAG CCGCAGCACT GAAAGCTGCC ATGGAAGAAC AGCTGGTGGA AAGCCGTATA
CCCATCGTGC TTGCTTACGA CGTATTGTTG CAATACCTGA TGACATTAGG CATTTCTGAT
GGCTTCCATG CAACTGAAAT ATGGGAGGAA ATTACCAACA CCTTTTGCTT CCGCGATGTA
ACAGAAGATG AATGGGCCTG GATGCTGGCA TTTCTAAGCA CCGGCGGAGA TGCACTTTAC
AGCTACGATG AATTCAAAAA GCTGGAAAGA GAAGGCGACT TTTTCATCTG TCGCAGCCGT
ATGCTGGCGA TGCGCCACCG ACTGCATATC GGTACGATTG TAAGCGACGC CATGCTGAAA
GTAAAATTTA TGAGCGGCGG TTTCATCGGC ATGATAGAAG AATGGTTTGT TGCCCGTCTG
CAGCCCGGAG ATGCCTTCAG TCTGGGCGGA CGCACACTGG AATTTGCCAT GATCAAAGAC
ATGACGGTAC TGGTGCGTAA ATCCAATGCC AAACGTGCCA TTGTACCCAG CTGGATGGGA
GGACGTTTAC CCCTTTCTGC CAATCTGGGT AAAATGCTGC GCCGCACTTA TAACGAAGCA
TTATCCGGCA AATCAGATAT GCCGGAGATC AAAATATTAC AGCCCTTATT CGACTTACAG
GAACGGCTTT CTCACATACC CAAGGACAAT GAACTGCTGA TCGAAATGAT CACTACCCGT
GATGGTTATC ACATGTTTGT CTATCCTTTT GAAGGGCGAC TGGTACACGA AGTAATGGCG
GCACTGCTGG CTTACCGTAT CAGTAAACGG CAGCCGATCA CTTTCTCCAT GGCCATGAAT
GACTATGGTT TTGAATTGCT GTCAGATCAG CCGATTCCGG TAAGTGAAGG AGATGTACAC
GATCTTTTCT CTCTGGAAAA TCTGACTATT GATCTACAGG CCAGTGTCAA CTCAACAGAG
ATGGCCCGCA GGAAATTCAG GGATATAGCA GTTATCGCAG GACTGATCTT CCAGGGGTAT
CCCGGCAAAC ATAAAGCCAG CCGGCACCTG CAATCATCAG CCTCATTACT GTTCAATGTA
TTCAAGGATT ATGATCCGCA GAACCTGTTG TTACGACAGG CATTCAATGA AGCCTTTTTC
TATCAGATGG AAGAAGCCAG GTTACGGGAA AGCCTGGACC GTATTTACAA CAGCAATATC
ATCATTACGG AACCTGAAAG CCTGACACCT TTCTGTTTCC CGATAAAAGT AGATAGTTTA
AGGGAAAACC TGACCAGCGA AAAACTGGAG GACAGAATCA AAAAAATGCG TCCGCAGTTT
TAG
|
|---|
| Protein sequence | MKNKARGWQV IIEWLAARDR KPFTFQEEAW KHYMQGKSGL VNAPTGYGKT FSLFLGVVID
WINKHPDDYQ EKTKNGLQML WITPLRALAK DIARAMEEVL QELNMPWQVG IRSGDTPIST
RQQQKKMMPE ILLITPESLH LLMGQKEYPK VFTHLTTVVA DEWHELLGSK RGVMVELGLS
RLRGLAKKAG RPPLKVWGIS ATIGNLDEAL DVLLGQPDPE AVIIRAKLDK KIELQSILPD
EIEKFPWAGH LGTKLLYKAL PVIMNSKTTL IFTNVRSQTE IWYQEILRQC PELAGAIAIH
HGSIDMELRV WVEEALHTGV LKAVVCTSSL DLGVDFRPVD TVIQVGSPKG VARFLQRAGR
SGHQPGATSK IWFLPTHSLE LVEAAALKAA MEEQLVESRI PIVLAYDVLL QYLMTLGISD
GFHATEIWEE ITNTFCFRDV TEDEWAWMLA FLSTGGDALY SYDEFKKLER EGDFFICRSR
MLAMRHRLHI GTIVSDAMLK VKFMSGGFIG MIEEWFVARL QPGDAFSLGG RTLEFAMIKD
MTVLVRKSNA KRAIVPSWMG GRLPLSANLG KMLRRTYNEA LSGKSDMPEI KILQPLFDLQ
ERLSHIPKDN ELLIEMITTR DGYHMFVYPF EGRLVHEVMA ALLAYRISKR QPITFSMAMN
DYGFELLSDQ PIPVSEGDVH DLFSLENLTI DLQASVNSTE MARRKFRDIA VIAGLIFQGY
PGKHKASRHL QSSASLLFNV FKDYDPQNLL LRQAFNEAFF YQMEEARLRE SLDRIYNSNI
IITEPESLTP FCFPIKVDSL RENLTSEKLE DRIKKMRPQF
|
|---|
| |