Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6857 |
Symbol | |
ID | 8363049 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 8589369 |
End bp | 8590961 |
Gene Length | 1593 bp |
Protein Length | 530 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644968990 |
Product | ATP dependent DNA ligase |
Protein accession | YP_003126459 |
Protein GI | 256425806 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.924337 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.118478 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGAAT TTGCCACACT CATCAGAATA TTGAGCAACA GCACCAAGAC GAATGAGAAA CTGGATGCCC TCAGTAAGTA CATGGCGACT GCCGATGCTG CCGACCGGCT GTGGGTACTG GCGCTCTTTA CAGGTCGCCG GCCGAAACGT ACCGTGAATG CAACACAACT CAGTACCTGG TGCTTACAGA TGACCGGTTT ACCCGCCTGG CTCTATGAAG AGTGTTATCA TACTGTCGGG GATCTGGCAG AAACCATCGC ACTGCTGCTG CCTCCCGGTA AAAGCATTTC CGTGCATCCC CTGCATTACT GGATCGATCA ACTGATACAG CTGGAAAAAG CCGATGAAAC GACCAAACAA ACCTTCATCC TCAAAGCCTG GGAAGAACTG GATACCAGCG AACGCTTTGT ATTCAATAAA CTGATTACAG GGGGCTTCCG TATCGGTGTA TCACAGAAGA TGATGGTCAA TGCCCTGGCA GATACGTATG ATATTCCGGC GGCGACCATC TCACATATGA TCAGCGGTAA CTGGGATCCA CAGAAAACCA CTATAGAGGC ATTATTAAGC GAAAATATTA CCGAAGCCGA TGCTTCCAAA CCTTTTCCGT TTTACCTCGC CTATGCCCTT GAAACTGGCC CTGCTGAACT GGGTACGCCG GAACAATGGC AGGCGGAATG GAAATGGGAT GGTATCCGCG GACAGATCAT CAAGCGTAAT GGACAGCTGT TTGTATGGTC ACGCGGAGAA GAACTGATAA CGGAGAAGTT CCCTGAATAT CAGCCACTCC TGGAACTATT ACCTGAAGGT ACAGTGCTGG ACGGAGAGAT CCTGACTTTC GCAGATGGCT TTCCCTTACC TTTTCAAACC CTGCAGACAC GTATCGGCAG GAAGAACGTT ACCAAGAAAC AATTACAGGA AGCGCCCGTC GCCTTCCTGA GTTATGACCT GCTGGAATGG GAAGGACAGG ATATCCGGAC TACCGCCCTC CAGGAACGCC GGGTACTGCT GGAACAACTG GTGGAAAAGA TCAATCATCC TACCCTTCGC CTCTCTCCTG CCATTACCTT TCATGACTGG GAAGAACTGG CGGCATTCCG CTTACAGGCC AGAGAAAAAG GGAGCGAAGG ACTGATGCTG AAGAAACTGG ATTCTGCCTA CCAGGTGGGT CGTAAGAGAG GCGACTGGTG GAAATGGAAA ATAGATCCGC TGACAATAGA CGCTGTCATG ATATATGCCC AGAAAGGACA CGGCCGGCGG TCGAACTTAT ACACAGATTA TACTTTTGCC GTCCGGGACG GGGAACAGCT GGTGTCGTTT ACAAAGGCTT ATTCCGGCTT GACGGACAAA GAGATCAACG AAGTGGATAA CTGGGTAAAA CGGAATTCTA TTGAGAAGTT TGGTCCGGTG AGGACCGTGA AACCGGAGCT GGTATTTGAA ATCGGTTTTG AGGGCATCGC AGCTTCCAAC AGGCATAAAT CAGGCGTAGC CCTACGTTTT CCCCGGATAT TACGCTGGCG GAAGGATAAA CCGGTAACAG AGATCAACAC ACTCACTGAT TTACAGCAAC TACTGCAAAT GCACAAACAA TAA
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Protein sequence | MKEFATLIRI LSNSTKTNEK LDALSKYMAT ADAADRLWVL ALFTGRRPKR TVNATQLSTW CLQMTGLPAW LYEECYHTVG DLAETIALLL PPGKSISVHP LHYWIDQLIQ LEKADETTKQ TFILKAWEEL DTSERFVFNK LITGGFRIGV SQKMMVNALA DTYDIPAATI SHMISGNWDP QKTTIEALLS ENITEADASK PFPFYLAYAL ETGPAELGTP EQWQAEWKWD GIRGQIIKRN GQLFVWSRGE ELITEKFPEY QPLLELLPEG TVLDGEILTF ADGFPLPFQT LQTRIGRKNV TKKQLQEAPV AFLSYDLLEW EGQDIRTTAL QERRVLLEQL VEKINHPTLR LSPAITFHDW EELAAFRLQA REKGSEGLML KKLDSAYQVG RKRGDWWKWK IDPLTIDAVM IYAQKGHGRR SNLYTDYTFA VRDGEQLVSF TKAYSGLTDK EINEVDNWVK RNSIEKFGPV RTVKPELVFE IGFEGIAASN RHKSGVALRF PRILRWRKDK PVTEINTLTD LQQLLQMHKQ
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