Gene Cpin_6827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6827 
Symbol 
ID8363019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8552185 
End bp8553021 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content49% 
IMG OID644968960 
Product5-keto-4-deoxyuronate isomerase 
Protein accessionYP_003126429 
Protein GI256425776 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3717] 5-keto 4-deoxyuronate isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCAG AAACCAGGTA CGCCTCTAGT CCGGCGGAGG TAATGAGCTG GAATACAGCC 
CAGACCAGAA AGGAACTTTT GATTGAACAG CTGTTCGTAC AGGATGAGAT TAAACTGGTA
TACAGTCACT ATGACCGCTT TGTTACAGGT GGTATTTTCC CGGTTACGAA ACCATTGCAA
CTGACTGCTC CTGATCAGTT CAAGGCGGCT TATTTCCTGG AAAGGAGAGA GCTGGGGATC
ATCAATGTGG GTGGTGCCGG AGTGGTAACA GTGGATGGTG AAACCTTTGA AATCGGCTTT
AAAGAAGCGC TGTATGTGGG TAAAGGGAAG AAGGAAGTGT CTTTCAGCAG TAAAGACAGT
GCCGCGCCGG CGAAGTTCTA CCTGAATTCA ACACCTGCAC ATCATGAATA TCCGAGTCGC
CATGTGACCC GTAAAGATGC GGAAGTAGTG ACACTTGGTG CGATGGAAAC ATCTAATCAC
CGTACTATCA ATAAGCTGCT TGTCAGCACA GTATTGCCTA CCTGCCAGTT GCAGATGGGG
ATGACTGAAC TCAAACCTGG CAGTGTATGG AACACCATGC CTGCACATAC GCATGACAGA
CGTATGGAAG TCTATTTCTA TTTCGAAGTG CCACAGGGGC AATCTGTCTG CCATTTCTGG
GGCCAGCCGC AGGAAACCCG GCATATCTGG ATGCAGAATG AGCAGGCGGT TATTTCTCCG
CCCTGGTCTG TTCACTCCGG CGCTGGTACC AGCAACTATA CTTTCATCTG GGGGATGGCG
GGCGAGAACC TGGATTATGG GGATATGGAT GTATGTGCAA TACCTGATCT CAAATAG
 
Protein sequence
MTAETRYASS PAEVMSWNTA QTRKELLIEQ LFVQDEIKLV YSHYDRFVTG GIFPVTKPLQ 
LTAPDQFKAA YFLERRELGI INVGGAGVVT VDGETFEIGF KEALYVGKGK KEVSFSSKDS
AAPAKFYLNS TPAHHEYPSR HVTRKDAEVV TLGAMETSNH RTINKLLVST VLPTCQLQMG
MTELKPGSVW NTMPAHTHDR RMEVYFYFEV PQGQSVCHFW GQPQETRHIW MQNEQAVISP
PWSVHSGAGT SNYTFIWGMA GENLDYGDMD VCAIPDLK