| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6789 |
|---|
| Symbol | |
|---|
| ID | 8362981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8500242 |
|---|
| End bp | 8501489 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644968922 |
|---|
| Product | type I phosphodiesterase/nucleotide pyrophosphatase |
|---|
| Protein accession | YP_003126391 |
|---|
| Protein GI | 256425738 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1524] Uncharacterized proteins of the AP superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0417562 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA TATACCTGGC CTCCTGCCTA TGTCTCCTTT TAGGGGGAGC AGCGCAGGCA
CAGCAAAGAG AAAAGAAGGT CGTGTTTGTC ATTGCAGATG GTATTCCGGC AGATGTACTG
GAAAAGCTAC AGACGCCTGC TATTGACCGC ATTGTTGATG CGGGCAGGTA TACGCGTATG
CATGTAGGCG GTGATAAGAA CGCCTATAAC CAGACGCCTA CCATATCGGC AGTAGGGTAT
AACAGTCTGC TGACGGGTAC CTGGGTGAAC AAACATAATG TGCCTGACAA CGACATCACG
GATCCTAACT ATCATTACTA TAACCTTTTC CGGCTGTTTA AAACACAGTT TCCTGCGAAG
AAGGTTGCGA TCTATTCCAG CTGGCTGGAC AATCGTACCA AGCTGGCCGG GGATGGACTG
GCACAGGCGG GAAATGTACA TATCGATCTC CATGCGGATG GTTATGAACT GGATACTGTT
CATTTTCCGC ATGACAGGAA AAGGGACTTT ATGCACGCGA TTGATGAAAA AGTGATCGAT
GAGGCAACTG CCGGTATTAA AAAAGACGCA CCTGCGCTGT CATGGGTCTA CCTGGAGTAT
ACCGATGATA TGGGGCATGG CTATGGCGAC AGTCCGGAGT TCTACAGCGC AGTAGAACTG
ATGGACAAAC AGATGGGCCG TCTCTGGGAG GCGATTACCT ACAGGCAACA GCACTTCAAG
GAAGACTGGA TGCTGGTGAT CACTACAGAT CATGGCCGTG ATGAAAAGAC CGGTCGTGAT
CATGGTGGGC AATCCACACG TCAGCGCAGT ACCTGGATGG TCAGCAGTTA TAAACCTGCC
AATGAATATG CCCGTTATTA TGAGCCGGGA ATTGTGGATA TCATGCCTAC GATTGCCCGT
TACCTGAATA TGGATATTCC GGTAAGTACG GCGCGTGAAA TAGATGGTAT TCCGATGATC
GGTAAGGTGG CGATAGCGAA TGTAAACGCT AATTTCATAC AGGATAATAT CGACCTGAAA
TGGTCAGCCC TGCAGGATAC AGGTAATGTA AAGATCTGGG TGACTACCAC CAACAATTTC
AAAACGGGCG GTACTGACGA GTACAAATTG CTGGCAACTG TACCCGTACA GGACCGTCAT
GCGTTGATCA ACGTCGGGCA ACTACCTTCC CGCTTTTATA AGATCGTACT GGAAACAAGT
GCCAATACTG TAAATACATG GTTAGACCTG GATATTAAGT CCAGGTAA
|
|---|
| Protein sequence | MKKIYLASCL CLLLGGAAQA QQREKKVVFV IADGIPADVL EKLQTPAIDR IVDAGRYTRM
HVGGDKNAYN QTPTISAVGY NSLLTGTWVN KHNVPDNDIT DPNYHYYNLF RLFKTQFPAK
KVAIYSSWLD NRTKLAGDGL AQAGNVHIDL HADGYELDTV HFPHDRKRDF MHAIDEKVID
EATAGIKKDA PALSWVYLEY TDDMGHGYGD SPEFYSAVEL MDKQMGRLWE AITYRQQHFK
EDWMLVITTD HGRDEKTGRD HGGQSTRQRS TWMVSSYKPA NEYARYYEPG IVDIMPTIAR
YLNMDIPVST AREIDGIPMI GKVAIANVNA NFIQDNIDLK WSALQDTGNV KIWVTTTNNF
KTGGTDEYKL LATVPVQDRH ALINVGQLPS RFYKIVLETS ANTVNTWLDL DIKSR
|
|---|
| |