| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6760 |
|---|
| Symbol | |
|---|
| ID | 8362952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8471035 |
|---|
| End bp | 8471586 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644968893 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003126362 |
|---|
| Protein GI | 256425709 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAATAAAC TGATCAACCC ACAAAGTGCA AAGGATATAT ACAGGCAGTG CTTTCAAGAT
AACTTTGAAC GCCTGCACCG CTATGCCTTT ACACTGTTAC AGGATAATGA GGAAGCCAGA
GACGTTGTGC AACAGGCTTT TATCAAACTC TGGCAGAAAA GGGACGAGAT CAACCTGGAG
CTGGCGGGCA GGTCATACCT ATATACTACG GTACAGCGAC AGTGTATTAA TATTTTCAGG
CATAACAAGG TCAGACGGCA TTATAAAGAT TCGGTAATGG CTACACATCA GGAGGAGTAC
ACGGATCATC AGCTGGAAAA CCGGGAACTC AGTAACAGGA TCAGTACTGC TATGGATGCT
TTACCACCGA AATGCAGGGA GATATTCTGC AAGAGTCGTT TTGAGGAGAA GAAATACGCA
GAGATTGCCG CAGAACTAAA TATATCGGTC AAGACTGTAG AGGTGCAGAT GGGCAAGGCC
CTCAAGATAA TGAGGGAACA GCTGGCAGAT ATCATCACAA TATCCATTAT TCTCATTGCA
TATTTCAAAT AG
|
|---|
| Protein sequence | MNKLINPQSA KDIYRQCFQD NFERLHRYAF TLLQDNEEAR DVVQQAFIKL WQKRDEINLE
LAGRSYLYTT VQRQCINIFR HNKVRRHYKD SVMATHQEEY TDHQLENREL SNRISTAMDA
LPPKCREIFC KSRFEEKKYA EIAAELNISV KTVEVQMGKA LKIMREQLAD IITISIILIA
YFK
|
|---|
| |