Gene Cpin_6742 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6742 
Symbol 
ID8362933 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8449942 
End bp8450532 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content46% 
IMG OID644968874 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003126344 
Protein GI256425691 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.318471 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCGTA TGCCATCCGA GGAAGAGGTG TTGTTAAGGA TGATGCAGGG AGATGAGTCT 
GCGTTCACGA AGATTTACCG ACACTATCAC GCCTCGCTCT ACGTTTACTT GCTGCGTTTT
TGCAAGGTTC CTTCCCTTGC AGAAGACCTG GTGCACGATG TTTTTTTGAA AGTATGGGAG
ATCAGGGACC GTATTAACCC CGAATTGTCC TTTACAGGAT ACTTATACAG GATAGCCCGT
AACCACGTTA TTAAGACTAT CGACAAACTT ACTACCGACA AAAACTTCCG GGACCAGTTA
TTCAGTCAGC TCGAGGATGT TTCTGCCGTC CAGCCGGAAC AGCAGGTAAG GACGAAGGAA
TATGACCGTC TTTTTCAGGA GGCCCTGGTC AGGATGCCGC CCCAGCGTCT GAATGTGTTC
AAATTATGCC GTCAGGAAGG AAAAAGCTAT GATGAAGTGG CCCTTTTGCT GGGCATTTCC
AGGAATGCCG TAAAAAAACA CATGGTTTTA GGGATGCGCT TTATATACGA TTATGTGCAT
CGTCATGGTG ATATTTTACT CGCCATTTAT CTCGCCGGAA AAATATTTTA A
 
Protein sequence
MDRMPSEEEV LLRMMQGDES AFTKIYRHYH ASLYVYLLRF CKVPSLAEDL VHDVFLKVWE 
IRDRINPELS FTGYLYRIAR NHVIKTIDKL TTDKNFRDQL FSQLEDVSAV QPEQQVRTKE
YDRLFQEALV RMPPQRLNVF KLCRQEGKSY DEVALLLGIS RNAVKKHMVL GMRFIYDYVH
RHGDILLAIY LAGKIF