| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6741 |
|---|
| Symbol | |
|---|
| ID | 8362932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8448668 |
|---|
| End bp | 8449858 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644968873 |
|---|
| Product | anti-FecI sigma factor, FecR |
|---|
| Protein accession | YP_003126343 |
|---|
| Protein GI | 256425690 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.454691 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTAT CCACGGAACG TTACGAAAAA CTTTTACAGA AATACCTTGA CGGTCAATGC
AATAGGGCCG AAATGGAAGA ACTGTATGCC TGGCTGCAAT CGTCAGGATC TAATCGTTCT
TTGCTTGCCG CCATGCAGCG GGAGTTCGAA AAGACAATGG GTGAGCATTA TGAGATTCCT
TCTGAACTGA GCGATCGTAT CGAAACAAGA CTTTTACAGG ACATTTCCCA GGAGAAAGTA
ATCCGGTTCC CGCAACGTAT GCGTTTGCGC TGGATAGCAG CAGCTGCGGT AGTATTGCTG
GCAGGTAGTG GCGTCTATTA TTATATGAAT ACGGTCTCCT CCCGCAAGGC ACTTACTGCA
AATACCGGTG TACTGGCAGC TGATACCGGA GATATTGCGC CTGGTACTAA TAAGGCTATA
CTGACGCTGG CTAATGGAGA TGTGGTGACA CTGGATAGCG CAGGAAATCA GATCATCAAC
CAGGGGGAAA CGGTTGTCCG CCAGCAGAAT GGGCAGCTGC ACTATGCAGG ACAGGGTAGC
AGTGATGTTG TTACTTATAA TACACTGACC GTTCCAAGGG GAGGTCAGTT CAATATTGTA
CTGTCAGATG GCAGCCATGT ATGGCTGAAT GCGGCATCCA GTATGAGATA TCCGACCTCT
TTTAACGGAG ATCGGCGGGA GGTCGAAATT CAGGGACAAG GCTATTTTGA AGTGGCGCCA
AACGCCAGCA AGCCATTCTT TGTAAAAGCA AATAATACAG AAGTACAGGT ATTGGGAACC
CAGTTTGATA TCATGGCCTA TGCCGACGAA AAGAGTATCA ATACAACACT GATCGAGGGA
CTGGTCAATG TTAAGTATGG AAATACAGAA CAACGCCTGA AGCCAGGCCA ACAGGCAGTC
GTTGACCCTG CCACTGGCGT TATGGTAGTT ATGAAGGCGG ATGTAGACCA GGTAATTGCC
TGGAAAACAG GTTTTTTTGA GTTTGATAAT GCTACTATGG CTGACATATT ACGTCAATTG
GCCAGGTGGT ACGATATAGA GGTTAGTTAC AACCAGACGG GAAATGAAAG GCTCTTTGGG
GGGCGTATAA GCCGGAGCTT ACCATTATCC GATATTCTGC ATATGCTGGA AGCAAATGGA
CCTACATTCT CACTGTCAGG GCGAAAACTA ACTGTTACAT CGGGTAAATA A
|
|---|
| Protein sequence | MSLSTERYEK LLQKYLDGQC NRAEMEELYA WLQSSGSNRS LLAAMQREFE KTMGEHYEIP
SELSDRIETR LLQDISQEKV IRFPQRMRLR WIAAAAVVLL AGSGVYYYMN TVSSRKALTA
NTGVLAADTG DIAPGTNKAI LTLANGDVVT LDSAGNQIIN QGETVVRQQN GQLHYAGQGS
SDVVTYNTLT VPRGGQFNIV LSDGSHVWLN AASSMRYPTS FNGDRREVEI QGQGYFEVAP
NASKPFFVKA NNTEVQVLGT QFDIMAYADE KSINTTLIEG LVNVKYGNTE QRLKPGQQAV
VDPATGVMVV MKADVDQVIA WKTGFFEFDN ATMADILRQL ARWYDIEVSY NQTGNERLFG
GRISRSLPLS DILHMLEANG PTFSLSGRKL TVTSGK
|
|---|
| |