| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6677 |
|---|
| Symbol | |
|---|
| ID | 8362868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8372490 |
|---|
| End bp | 8373524 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 644968811 |
|---|
| Product | signal transduction histidine kinase, LytS |
|---|
| Protein accession | YP_003126281 |
|---|
| Protein GI | 256425628 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3275] Putative regulator of cell autolysis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGAAAC AATACCGGAT ATTAGGAATC ATCATTTCAC TCGGAATAGG TCTGGCCGCA
GTACCCATTA AATTGACCGG AAGTGATGTT CATTCGGGTG GTCTATATTT AGCGGTACGC
ACAATCAGAT ATACTTTCAC AGCAGGACTA CTTGCATTTT TTTTACACCT TTGGTTGAAC
AGAAAATATG CCTTGCTTCA CAATAAAGGA CGATATCTGG CCTACGTATG CAGCATCATA
TTTGTTACCA TAGCTGTTTT TATCGCTTCT ATCTTACTCG ATTTTGTATT TAGCAGACTA
TCGACAAACT CCTCCTTATC CATTGCCATA GAGGATCTGA ACTGGTACCT GATGATATTA
AGGTGTTTAC TGCTTAGTAT GGTACAATTT CTTATTGTAT TTTATTTGCA ATTATTGAGA
GAAAGGCAAA ATCGTATTCT TGAATTAGAA AAGCTTAAAC AAGCGCAGTT GGAAGCCGAT
TTGTCCAATT TGAAGGAGCA AATGAGTCCA CACTTTTTGT TTAACACATT AAATACTTTA
ATCTCGATAA CACAGGAAAA ACAGGTTAAA GATTACGTTG CTGATCTTGC CAGTGTTTAT
AGATATATGC TGGTTCATAA TAAGTTGCAT GTTGTTTTAA TAGAAAACGA ATTAAATTTC
ATCAAGTCTT ACTTATATAT TATTAAAACA CGCCTAGGAG ATGCCATTGA AATAGACATT
CATCTTGAAG GGGAATTAAT GCAGACCCTG ATACCTCCAC TGACATTACA ACTTTTGCTG
GAAAACGCGA TTAAACATAA TATAGCATCT GTTGGCAAAC CTTTAAGAAT ACAGATCTAT
AATGACGCAT CGTTTATCAT CATAAGTAAT AATCTCAACC CAATGAAATC ACAGTATTAT
TCAACGGGGG TCGGACTAAG TAATTTGCTG AACCGCTATC AGCTCTTATT TTCCGGAAAT
TTAATAATTG AAAAAAGCTC AACAATGTTT ACTGTTAAGT TGCCTATATA TGAGAATTTT
AATTATAGAG AATGA
|
|---|
| Protein sequence | MWKQYRILGI IISLGIGLAA VPIKLTGSDV HSGGLYLAVR TIRYTFTAGL LAFFLHLWLN
RKYALLHNKG RYLAYVCSII FVTIAVFIAS ILLDFVFSRL STNSSLSIAI EDLNWYLMIL
RCLLLSMVQF LIVFYLQLLR ERQNRILELE KLKQAQLEAD LSNLKEQMSP HFLFNTLNTL
ISITQEKQVK DYVADLASVY RYMLVHNKLH VVLIENELNF IKSYLYIIKT RLGDAIEIDI
HLEGELMQTL IPPLTLQLLL ENAIKHNIAS VGKPLRIQIY NDASFIIISN NLNPMKSQYY
STGVGLSNLL NRYQLLFSGN LIIEKSSTMF TVKLPIYENF NYRE
|
|---|
| |