| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6611 |
|---|
| Symbol | |
|---|
| ID | 8362799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8289646 |
|---|
| End bp | 8291499 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644968743 |
|---|
| Product | 60 kDa inner membrane insertion protein |
|---|
| Protein accession | YP_003126216 |
|---|
| Protein GI | 256425563 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.290121 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0199221 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGAA ACTCAGTCAT TGGCTTCGCA TTGCTGGGCG TGTTGTTTGT CGGTTATATC
TTCTTTAACC AGAAACAACA GACTGCTGCA AAAAGAGAAA AAGATCGTCA GGATTCCATA
GCAAATGTAA ATAAGCCTAA ACCGGTTGAT ACTGCTGCCT ACGTAAACGG GGGCGTTGCT
GATTCCAGCA AGCTTGCAAG TGCATATGGC ACCTTCGCCG GCGCTGCCAA TGGTACCATT
CAGACAGCCG TTCTGGAAAA TAAAGTATTG AAAGTTACTT TCTCCAGCCA GGGTGGTCAG
CCAACTTTAG TACAACTGAA ACAATTCAAG GATTTCGAAG GAAAACCGCT GATGCTGGCA
AACAGCTCTT TCAACCGTAT TTCCCTTCAG GTTCCTGCTA ATAACAATAC GCAATTAAAC
ACTTCAGACC TGTACTTTAC CGGTGGTTCC GTACAGCAGC TGGCAGATGG TAGTCAGTCC
ATCTCCTACC GCCTGCCTAC CTCCAATCCT GAACAATACC TGGAGTATGT ATATACCCTG
AAGCAGGATG GTTATGCAGT AGACTTTGAT ATTCATGCTA TCGGACTGGA AAACGTCCTG
CCAAGTAATC AGAAAACCCT TTCCTTACAG TGGGATGCGG AAAATGATAA GCAGGAAAAA
GACATGCAGA ACGAACGCCA GAACAATCAG GTACACTACC GTGACGTGAA TGGCAAACAT
GACTATTTTA CCTTACAGCG TACCACGCAT GAGAAATGGG ACAACCAGCT GCAGTGGGTG
AGCGTAAAAC AGCAGTTCTT CAACACTACT TTCATTGCCA GAAAAGACGC ACATTTCAAC
GGTGCAGAGG TGAATGCCAA AGTGCCTGAA AGTGCTAATA TCGTAGGACA GACCTTCACT
ACGCTGGAAA TTCCTTACAA CCGTGCGCAT GATTTCACCT TCCCGATCGA AATCTACTAC
GGTCCTAACC ACTACTCGAC CTTAAAATCT TTTGATAACG GTCTGGAAAG TATCATTCCG
CTGGGTTCCG GCATATTCGC TTTCGTGAAA TATGTGAACA AATGGATCAT TATTCCTGTG
TTCAACTTCC TGAGCGGATT TATCGGTAAC TATGGTCTGA TCATCATCCT GCTGACCATC
TTTATCCGTT TACTGATAGC GCCTTTCACT TACCAGAGCT ATGTGTCTCA GGCTAAAATG
AAGGTACTGA AACCGGAAAT CGATGCCCTG AAAGCAAAAC ACGGTGATGA CCAGCAGGCT
TTTGGTGTAG AACAGATGAA ATTATTCAGA AGCGCCGGTG TGAACCCGCT CGGAGGTTGT
TTACCAGCCC TGATGCAGTT GCCTATCCTG GTAGCGATGT ATAGCTTCTT CCCGTCCTCT
ATCGAGCTGA GACAGGAAAG TTTCCTGTGG GCGACTGACC TTTCCGCTTA CGATTCTATC
CTGAACCTGC CATTTACCAT TCCTTTCTAT GGTAACCACG TCAGCCTGTT TACCCTGCTG
ATGACTGCCA CCAGTTTGAT GCTGGCATTC AATAACCGTG GTATGGCTGA TCAGAGCAAT
CCGGTAATGA AATATATGCC GTATGTGTTC CCGATCATGC TGTTAGGTAT CTTCAACCGT
CTGGCTTCAG CGTTGACCTT CTACTACTTC CTGTCCAACG TAATCAGTAT CGGTTTACAG
TGGGCGATCC AGAAGTTCTT CGTGAACCAT GATAAGATAC ATGCTCAGAT CCAGGAGAAT
AAAAAGAAAC CTGCTTCCAA ATCTAAATGG CAGGAGAAAC TGGAGGATAT GCAGAAGAAA
CAGCAAGACA TGCAAAAACG TCAACAGGAC ATACAACAGC GTAAAAAGCA ATAG
|
|---|
| Protein sequence | MDRNSVIGFA LLGVLFVGYI FFNQKQQTAA KREKDRQDSI ANVNKPKPVD TAAYVNGGVA
DSSKLASAYG TFAGAANGTI QTAVLENKVL KVTFSSQGGQ PTLVQLKQFK DFEGKPLMLA
NSSFNRISLQ VPANNNTQLN TSDLYFTGGS VQQLADGSQS ISYRLPTSNP EQYLEYVYTL
KQDGYAVDFD IHAIGLENVL PSNQKTLSLQ WDAENDKQEK DMQNERQNNQ VHYRDVNGKH
DYFTLQRTTH EKWDNQLQWV SVKQQFFNTT FIARKDAHFN GAEVNAKVPE SANIVGQTFT
TLEIPYNRAH DFTFPIEIYY GPNHYSTLKS FDNGLESIIP LGSGIFAFVK YVNKWIIIPV
FNFLSGFIGN YGLIIILLTI FIRLLIAPFT YQSYVSQAKM KVLKPEIDAL KAKHGDDQQA
FGVEQMKLFR SAGVNPLGGC LPALMQLPIL VAMYSFFPSS IELRQESFLW ATDLSAYDSI
LNLPFTIPFY GNHVSLFTLL MTATSLMLAF NNRGMADQSN PVMKYMPYVF PIMLLGIFNR
LASALTFYYF LSNVISIGLQ WAIQKFFVNH DKIHAQIQEN KKKPASKSKW QEKLEDMQKK
QQDMQKRQQD IQQRKKQ
|
|---|
| |