Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6558 |
Symbol | |
ID | 8362743 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 8223321 |
End bp | 8225384 |
Gene Length | 2064 bp |
Protein Length | 687 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644968687 |
Product | coagulation factor 5/8 type domain protein |
Protein accession | YP_003126163 |
Protein GI | 256425510 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3669] Alpha-L-fucosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00192951 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGGGC TTTGCAGCAC GCTGGCCACT GCTCATGCGC AGGACATTGC TCCGTATGGG GCGCTGCCAT CCAAATCACA GGTGGAGTGG CAGGATATGG AATATTACAT GTTTATCCAC CTTGGTCCGA ACACCTTTAC AGACAATGAA TGGGGACATG GCGACGAAGA TCCTAAGGTC TTCAATCCTT CCCAGTTGGA TGCCCGTCAG TGGGCGCGTA CCGCGAAACT CGCCGGTATG AAAGCGATTA TTATTACTGC GAAGCACCAC GATGGTTTCT GTCTGTGGCC AAGTAAATAC AGCACCCATA CGGTCAGAGA GAGTGCCTGG AAAGACGGGA AAGGGGATAT CCTGAAGGAA TTATCCGCCG CCTGTAAGGA GTACGGACTG AAGTTTGGTG TATATCTGTC TCCATGGGAC CGTAACCACC CTGCTTATGG TACACCGGAG TACAACCAGG TTTTCTCTAA TACATTAAAT GAAGTGCTGA GCAGCTATGG CCCTGTGTTT GAACAATGGT TTGACGGTGC TAACGGAGAA GGTCCGAATG GTAAGAAGCC GGTATACGAC TGGCCGCTTT TCCACAGTAC GGTATATAAG AACCAGCCGA ATGCGGTTAT TTTCAGTGAT GTGGGACCGG GTTGCCGCTG GGTAGGTAAT GAGGATGGCA TTGCAGGTAC TACGAGCTGG TCTACGCTGA ACGTGACTGG TTTTTCGCCA GGAAAGGGTG CGCCTCCACA GTCTGTACTG AATGAAGGGA ATATGAACGG AGAGAAATGG GTACCTTCTG AATGTGATGT GTCTATCCGT CCGGGATGGT TTTATAGTCC GTCTACCAAT GATAAGGTAA AAAGCGTACA GCAGCTGTTA GATATCTACT ATGGTTCTGT CGGCCGCAAC GGGAATATGC TGTTGAATGT GCCGGTTGAC CGGAGAGGTC TGATCTATTC AGCGGATTCT ACCCGTCTGA TGGAGTTCAG GAGAATGCGT GAAGAGAGCT TTAAGACCAA CCTGGCACTG AAAGCAAAGG TGACAGCCAC AGAAACCCGC AAGGGAAATA CACATGTTAA TGTGCGTAAC CTGATCGATG GTAAGAATGA CACTTACTGG GCTACGCCGG ATAATGCTTT ACAGGGAACA ATCACTTTGA CTTTCCCGAA GGCGGTTACA TTCAACCGGC TGGTGATGCA GGAGTATATT CCGCTTGGCC AGCGTGTGAA GGCGTTTAGC GTGGAAGTGC TGGAGAAAGG GGCGTTTAAG GAAGTAACGA CAGCTACCAC AATCGGACAT AAGCGTATTC TGTCCTTCCC GGATGTGACC ACTACGCAGG TGCGTGTGAA GATACTGGAT GCGCTGGCTT GTCCGGTGAT CAGCGAAGTA CAGCTGTACA AAGCGCCGGG TTTACTGGCG GTACCTGTTA TTAACCGTAA CAAGAACGGC GATGTGAGCA TTACCTGTTC TTCTCCGGAT CCGGAACTGC ATTATACCCT GGATGGCAGG GAGCCGACTT TCAAATCACC TAGATATACA GGTTTGATTC CCCTGCCGAA GGGCGGTGTT ATCAGGGCGA AGTCATTCCT GGAGAAAGGA AAGGTAGCCA GTACAACAAC TACTGTTAGT TATGATATAG CGCCGGCTAA GTGGAAGGTG ATATATACAG ATGATCAGGC AGCAGGTGCC GATCCGGAGA GAGCGATTGA CGGCAACCCG AATTCCTTCT GGATGACGAA CTACCAGCCG GATGCATCAA AATATCCGCA TGAGATCCAG ATAGATATGA ATGAGTCATT GACCCTGAAA GGGTTTGTGT ATACGCCTAG ACACCAGACG GTACGTTCCG GTACGATCTA TGGCTATGAG TTTTATGTGA GTGAGGATGG GGAGAACTGG GGCCAGCCTG TGGCACATGG AAACTTTGCG AACATTGCCA ACAATCCTGT GACGCAGACA ATTAAATTTA ACATTCCTGC AAAAGGACGA TTTATCCGCC TTGTGGCCAC TACGCCTGCC AATGAAAATG AGCATTGGGC CAGTGTGGCA GAGCTAGGCG TTATCACTAA ATAA
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Protein sequence | MAGLCSTLAT AHAQDIAPYG ALPSKSQVEW QDMEYYMFIH LGPNTFTDNE WGHGDEDPKV FNPSQLDARQ WARTAKLAGM KAIIITAKHH DGFCLWPSKY STHTVRESAW KDGKGDILKE LSAACKEYGL KFGVYLSPWD RNHPAYGTPE YNQVFSNTLN EVLSSYGPVF EQWFDGANGE GPNGKKPVYD WPLFHSTVYK NQPNAVIFSD VGPGCRWVGN EDGIAGTTSW STLNVTGFSP GKGAPPQSVL NEGNMNGEKW VPSECDVSIR PGWFYSPSTN DKVKSVQQLL DIYYGSVGRN GNMLLNVPVD RRGLIYSADS TRLMEFRRMR EESFKTNLAL KAKVTATETR KGNTHVNVRN LIDGKNDTYW ATPDNALQGT ITLTFPKAVT FNRLVMQEYI PLGQRVKAFS VEVLEKGAFK EVTTATTIGH KRILSFPDVT TTQVRVKILD ALACPVISEV QLYKAPGLLA VPVINRNKNG DVSITCSSPD PELHYTLDGR EPTFKSPRYT GLIPLPKGGV IRAKSFLEKG KVASTTTTVS YDIAPAKWKV IYTDDQAAGA DPERAIDGNP NSFWMTNYQP DASKYPHEIQ IDMNESLTLK GFVYTPRHQT VRSGTIYGYE FYVSEDGENW GQPVAHGNFA NIANNPVTQT IKFNIPAKGR FIRLVATTPA NENEHWASVA ELGVITK
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