Gene Cpin_6551 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6551 
Symbol 
ID8362736 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8215723 
End bp8216787 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content46% 
IMG OID644968680 
Productpeptidase M20 
Protein accessionYP_003126156 
Protein GI256425503 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGAACC AAAAACTGTA TGATGATGCA GTAACATTAT TAAAAGGGCT GATCTCCATT 
CCTTCTCTGA GCAGGGAAGA ACAGGGGACT GCACAACTGA TCGCTGATTT TCTCAAAGAA
AGGAATATTC CTCATCAGCA ACATCTGAAT AATATCTGGG CAAAGAACAA GCACTTTGAT
CCTGCAAAGC CCGTAATTGT ATTTAATTCT CACCACGATA CCGTTAAGCC TAACCCGCAA
TACACACGCG ACCCTTTTTC TCCTGATGTA GCTGATGGCA AACTGTATGG CCTGGGCAGT
AATGACGCCG GTGGATGCCT GGTAAGTCTG ATCGCCACTT TCCTGCATTT TTACGAACGC
AGCGATATGG CCTACAACAT CGTACTGACG GCAACAGCAG AAGAAGAGAT CAGCGGTGTA
AATGGTATTG AAAGTATACT TTCACAGCTT CCCGCTATTG AATTTGCTAT TGTAGGAGAA
CCTACGCAGA CACAGCTGGC AACTGCCGAA AAAGGACTGA TGGTGCTGGA TTGTACCGTA
ACCGGTAGAG CTGGTCATGC GGCGCGTGAT GAAGGAGAGA ATGCGCTTTA TAAAGCAATG
CCCGATCTGG AATGGTTCCG TACTTTCCAT TTTCCAAAGG TATCTGACAC ACTGGGCCCT
GTTAAAATGA GTGTGACAGT AATCAATACT TCCAATAAAG CACATAACGT CGTACCGGCT
GATTGTACCT TTGTAGTAGA TGTGCGCGTG ACGGAACAAT ATACACTGGA AGAAGTGCTG
GAGATCATCC GCGCTAATGT ACAGTGTGAT GTAAAGCCAC GTTCCCTGCG TATGCGTCCT
TCCGGTATTC CGCCGGAGCA TCCGTTTGTA CAGGCAGGAC TGCGTCATGG CAAAACAACT
TATGGTTCGC CGACTACTTC TGATCAGGCA CTGATACCAG GTACTTCCAT CAAAATGGGA
CCTGGCGATT CGGCCCGTTC ACATACAGCG GACGAATACA TTTACCTTGA TGAAGTACGT
CAGGGTATTG ACAGTTATAT TAAATTACTC GAAGAAATCT TGTAG
 
Protein sequence
MWNQKLYDDA VTLLKGLISI PSLSREEQGT AQLIADFLKE RNIPHQQHLN NIWAKNKHFD 
PAKPVIVFNS HHDTVKPNPQ YTRDPFSPDV ADGKLYGLGS NDAGGCLVSL IATFLHFYER
SDMAYNIVLT ATAEEEISGV NGIESILSQL PAIEFAIVGE PTQTQLATAE KGLMVLDCTV
TGRAGHAARD EGENALYKAM PDLEWFRTFH FPKVSDTLGP VKMSVTVINT SNKAHNVVPA
DCTFVVDVRV TEQYTLEEVL EIIRANVQCD VKPRSLRMRP SGIPPEHPFV QAGLRHGKTT
YGSPTTSDQA LIPGTSIKMG PGDSARSHTA DEYIYLDEVR QGIDSYIKLL EEIL