Gene Cpin_6512 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6512 
Symbol 
ID8362696 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8173926 
End bp8174729 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content49% 
IMG OID644968640 
Productpeptidase M48 Ste24p 
Protein accessionYP_003126117 
Protein GI256425464 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00139826 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.073163 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAAGA AACTTCTTCT TCTCGGTACG GGCCTGGCGC TGATCACAGC ATGCGCCAAA 
GTACCTATTA CTGGCCGCAG CCAGTTAAAC CTGATCCCTG AAAGCACCAT GCAATCTATG
GCCCTCCAGG AATATCAGAG TTTTCTTTCT CAGAATAAAA CTGTCGCAGC AACCACCAGT
AAGGATGCTG AAATGGTAAA AAGAGTAGGA CAGCGTATCG CGAATGCCGT TACCAAGTAC
ATGAACGATC ATGGTGCCGG TTCTCAGATT GCCAACTACA AATGGGAATT CAACCTGGTA
GATAGTAAGG AAGTGAACGC CTGGTGTATG CCGGGTGGTA AAGTAGTGGT GTATACAGGT
CTGCTGCCTG TTACACAGAA TGAAACGGCG CTTGCCTGCG TAATGGGACA TGAAATTGCG
CACGCTATCG CACGTCATGG TAACGAGCGT ATGAGCCAGC AGGTAGTGGC ACAGGGAATC
CAGGTAGCTG GTTCCGTAGC CCTGAACCGT AACCCTGCTG CACAGAATAT CTTCCTGCAG
TCTTTTGGTG TAGGCGGTAA CCTGGGTATG CTCGCATATT CCCGTAAAAA TGAGCTGGAA
GCTGACCACC TGGGTGTGAT CTTCATGGCA ATGGCGGGTT ATAATCCACA GGAATCAATT
CCTTTCTGGC AACGTATGGC TTCTCAGAGC GGCGGTAACA AACCACCCGA AATTACCAGC
ACGCACCCGA GCGATGAACG TCGTGTAGCT GAATTACAGC GCCTTATGCC TGAAGCAATG
AAGTATTATA CACCGATCAA GTAA
 
Protein sequence
MQKKLLLLGT GLALITACAK VPITGRSQLN LIPESTMQSM ALQEYQSFLS QNKTVAATTS 
KDAEMVKRVG QRIANAVTKY MNDHGAGSQI ANYKWEFNLV DSKEVNAWCM PGGKVVVYTG
LLPVTQNETA LACVMGHEIA HAIARHGNER MSQQVVAQGI QVAGSVALNR NPAAQNIFLQ
SFGVGGNLGM LAYSRKNELE ADHLGVIFMA MAGYNPQESI PFWQRMASQS GGNKPPEITS
THPSDERRVA ELQRLMPEAM KYYTPIK