| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6485 |
|---|
| Symbol | |
|---|
| ID | 8362669 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 8145427 |
|---|
| End bp | 8146374 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644968613 |
|---|
| Product | methionyl-tRNA formyltransferase |
|---|
| Protein accession | YP_003126090 |
|---|
| Protein GI | 256425437 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0223] Methionyl-tRNA formyltransferase |
|---|
| TIGRFAM ID | [TIGR00460] methionyl-tRNA formyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.53373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.520037 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAGTG AGTTAAAGGA CCAACAAAAT ATGAGGATCA TTTTTATGGG CACCCCTGAT
TTCGCAGTGG CTTCGCTCGA CATACTGGTG CAAAACGGCT ATAACGTGGT GGCTGTGATC
ACAGCGCCCG ATAAACCTGC CGGAAGAGGC TTACAATTAC AGCAGAGTGC TGTTAAACAA
TATGCAGTGT CCAGGAACAT TCCGGTATTG CAACCGGAGA AACTGAAGAA TCCGGATTTC
CTGACGGAAT TAAGGGCTTT AAAAGCCGAT CTGCAGGTAG TGGTGGCTTT CCGTATGTTA
CCTGAAGTAG TATGGGATAT GCCGCCTTTA GGCACGATCA ACGTACATGC TTCGTTGTTG
CCTAACTACA GAGGCGCAGC CCCTATCAAC TGGGCCATCA TCAACGGAGA GAAAGAATCG
GGGGTAACCA CCTTCAAACT CCAGCATGAA ATCGATACAG GCGATATCCT GTTTAGCCAG
TCTGTAGTAA TCAGAGATGA TGAAACTGCC GGTGAACTCC ATGACGACCT GATGGCAACG
GGCGCAGGTC TGCTGTTAAA AACAGTACAG GCACTGGGTT CCGGCACAGC AGCCGGTACA
CCACAGGCGC ATATCAAAGC GGAAGAAATC AAACATGCAC CAAAGATCTT TAAAGAAGAT
TGTCAGATAA AATGGGAACA ACCTGTCGAA CAGATCTACA ATCTTGTACG TGGTATGAGC
CCCTATCCTA CTGCATGGAC TATGCTTGCC GGAAAGAGCG TAAAGATATT CAAAGCGACC
AGGGAACATG CACAGCCTTC TGTTGCCCCG GGTGAAGCAA TCAGCGACAA CAAAACCTAT
CTGAAAATAG CGGCGCCGGA TGGCTATCTA TCCCTACAGG AGATACAGAT GGAAGGTAAA
AAGCGGATGG ATATAGAGGC ATTCCTGAGA GGAAACAAGG TCAATTAG
|
|---|
| Protein sequence | MQSELKDQQN MRIIFMGTPD FAVASLDILV QNGYNVVAVI TAPDKPAGRG LQLQQSAVKQ
YAVSRNIPVL QPEKLKNPDF LTELRALKAD LQVVVAFRML PEVVWDMPPL GTINVHASLL
PNYRGAAPIN WAIINGEKES GVTTFKLQHE IDTGDILFSQ SVVIRDDETA GELHDDLMAT
GAGLLLKTVQ ALGSGTAAGT PQAHIKAEEI KHAPKIFKED CQIKWEQPVE QIYNLVRGMS
PYPTAWTMLA GKSVKIFKAT REHAQPSVAP GEAISDNKTY LKIAAPDGYL SLQEIQMEGK
KRMDIEAFLR GNKVN
|
|---|
| |