Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6477 |
Symbol | |
ID | 8362661 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 8136612 |
End bp | 8138327 |
Gene Length | 1716 bp |
Protein Length | 571 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644968605 |
Product | multi-sensor signal transduction histidine kinase |
Protein accession | YP_003126082 |
Protein GI | 256425429 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0945672 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGTAC AACATCTTTT AGACACGAAT GAGGCCCGTT TAAAGGCTGT GATTGAGGCA ACCCCGGAAT GTATCAAAAT TGTAGCCCCG GACGGGACTG TGCAGTTTAT GAACAAGGCC GGGCTGTGTA TGGTGGATGC TACTGAAGCC CAGACTGTTG AAGGATGCTG CGTATTTGAT ATTATCGCCG CTGAACACAG GGACCGCTGG ATTGAAAACC ATAACAGGGT ATGCAACGGT GAAAGCCTGA ACTGGGAATT TGATCTGATC AGCCTGAACG GTACCCGGCG CCATATGGAA ACACACGCCG TTCCGATGCC CAATGGCGAT GGCACATTTT CACAACTCGC TGTTACCCGT GATGTTACGG AAAGAAAACG GTCAGAGCAG ACGCTAAAGA GACATGACAT CATTCTCCGG GGACAAAAAT ATGCGCTGGA ACAGGCTGTA CACGGCAAAC CTATCAAAGA AGTACTGGAA ACCCTGGTAA AAACAGTGGA GGATCAGTCA GATGGTTCTT TAATGGCCTC CATTCTGCTG ATAGATCCGG AGGGCAGGCG GATGTTGCAT GGTGCATCAC CCAGTTTGCC TGCCGGTTAC AATGAGGCCG TCAACGGTGT AGAGATCGGC CCGGCTGTGG GTTCCTGCGG AACTGCTGCC TTCAGAGGAG AAGAGATTAC CGTACAGAAC ATTGCCGATG ATCCCTTATG GGCCGATTAT AAAGAACTGG CCTTATCACA TGGTTTGCGC GCCTGCTGGT CCATACCGAT CCTCTCTTCG CAGCAGCGCC CTATCGCAAC ATTTGCACTC TATTATAGCA TAGAACAAAC ACCTGCTCCG GAAGACAGGG AAGCGGTGGA ATTACTGGCA AGAACGGCCG GGATCGTGAT AGAATGGTAC AGGGAGATCG CTGAGCGCAA GGAATTAATG GCCCAATTGG AGACCCGTGT CAGCGAGCGT ACCAATGAGC TCAATAACGT CAATGCCGCT TTACAGAGCT CTAATGATAC CCTGGAACAG TTTGCACACG TGGCCAGTCA TGACCTGAAA GAACCGGTCC GGAAGATCAA GATATTCACA TCCAGACTGG AGGATGAAAC GGGACATTTA CTGAATGAGC GAGGAAAGAC TTACCTCCAT AAGATCCAGT CATCCGCAGA GCGTATGTCT ACCATGATAG AAGGGGTGCT CAACTACTCT GTGCAGAACG GAGCCCCTAA GATCAACGAA AAAATAGACC TGAACATCAT CATAGAAGAG ATCAGGAATG ACCTGGAGGT CGTGATCCAG CAGAAACATG CAGTCGTGAA TGCGGGTCCC CTACCGGTCA TAGAGGGCGA TCGCATACTG ATACACCAGT TGTTCTATAA TCTGCTGAAC AATTCACTGA AGTTCACTAC TGAGCAGGAG CGACCTGTCA TCACCATTGA AGCGACGCCG GTGCTGCAAC ACGAGGATGC CAGTTATAAT ATTCTGATAA CGGATAACGG TATCGGCTTT GATCAGCAGC AAAGCGAAAA GATATTCGAT ACCTTCACCC GCCTGAATTC AAAGGACAAA TACGACGGTA CGGGCCTCGG ACTGGCCTTG TGTAAGAAGA TCGTACAACG CCATCATGGG ACTATTATGG CGAGCAGTGA AAATGGGAAA GGCGCTACTT TCAGTCTGAT ATTGCCAGTC GTACAACCCG CATCAGCCGA TCTGCAACCC GTATAA
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Protein sequence | MQVQHLLDTN EARLKAVIEA TPECIKIVAP DGTVQFMNKA GLCMVDATEA QTVEGCCVFD IIAAEHRDRW IENHNRVCNG ESLNWEFDLI SLNGTRRHME THAVPMPNGD GTFSQLAVTR DVTERKRSEQ TLKRHDIILR GQKYALEQAV HGKPIKEVLE TLVKTVEDQS DGSLMASILL IDPEGRRMLH GASPSLPAGY NEAVNGVEIG PAVGSCGTAA FRGEEITVQN IADDPLWADY KELALSHGLR ACWSIPILSS QQRPIATFAL YYSIEQTPAP EDREAVELLA RTAGIVIEWY REIAERKELM AQLETRVSER TNELNNVNAA LQSSNDTLEQ FAHVASHDLK EPVRKIKIFT SRLEDETGHL LNERGKTYLH KIQSSAERMS TMIEGVLNYS VQNGAPKINE KIDLNIIIEE IRNDLEVVIQ QKHAVVNAGP LPVIEGDRIL IHQLFYNLLN NSLKFTTEQE RPVITIEATP VLQHEDASYN ILITDNGIGF DQQQSEKIFD TFTRLNSKDK YDGTGLGLAL CKKIVQRHHG TIMASSENGK GATFSLILPV VQPASADLQP V
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