| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6468 |
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| Symbol | |
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| ID | 8362652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 8128219 |
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| End bp | 8128839 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644968596 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003126073 |
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| Protein GI | 256425420 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000775614 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAATCGG AGAGTCACGT GTTATGGTGG AATGCGTTTA AACAGGGGGA TTGGGACGCT
TTTACTGCGC TCTACGGTGA ATTTTATGAA TTGTTGAACA ATTACGGCCG CAAATTTACG
CAGGATGCGG ATCTGATCCA GGATGTAGTA CATGATCTTT TTGTAAGACT ATGGACTACC
CGCGCAAGAC TGGGCAATCC AGCCTCCGTG AAGAATTACC TGTATAAAGC ATTACGCTCT
ACATTGTTTC GTAAAATACA ATCCCTGTCT AAATTTGTAG AACTGGACAA TGCATCCGGA
CAGGGAGCCT TTGCTGTCAA CTTTATACCT GATGCCTCTT TCCGCCAGGA AGAACAGGAA
CTCAGAAATC AGGTCATCGC ACTTGTTAAT ACACTGCCTG CCCGTCAGCA GGAAATCATC
TTTCTCCGTT TTTATGAAGG AATGTCCTAT GAGGAAATAT CCGTCATTAT GGACATCAAT
ATGAGCTCCA CTTATAAATT ATTATATAAG GCCCTCGACA ACCTTCATAA AGTGTCAGAT
AAATGCTTCC TGACCTTCCT CAGCATAATG ATATTCCTCT TTAGAAATTT TTCTAAAAAA
ATTCCGGTAA CGGAGGGATA A
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| Protein sequence | MQSESHVLWW NAFKQGDWDA FTALYGEFYE LLNNYGRKFT QDADLIQDVV HDLFVRLWTT
RARLGNPASV KNYLYKALRS TLFRKIQSLS KFVELDNASG QGAFAVNFIP DASFRQEEQE
LRNQVIALVN TLPARQQEII FLRFYEGMSY EEISVIMDIN MSSTYKLLYK ALDNLHKVSD
KCFLTFLSIM IFLFRNFSKK IPVTEG
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