Gene Cpin_6449 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6449 
Symbol 
ID8362633 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8104919 
End bp8105905 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content47% 
IMG OID644968577 
Productanti-FecI sigma factor, FecR 
Protein accessionYP_003126054 
Protein GI256425401 
COG category[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG3712] Fe2+-dicitrate sensor, membrane component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCTAT TCGACCAAAG TCTGCTACAT AAGTATGAGC ACAACCAATG TACTCCTGAA 
GAATACGAAA GAGTACTGGA ATGGTTTACC ACGCCCGAAG GACGGGAATA TCTGGAAACT
GCCATGACGC AGGAACTGGA TAGTGAAAAA CCAGATATGC TTATGTCTAC ATCACAGGCG
GCAGACCTTT ACCAGCGCAT ACTGGATACT ACAGGTCAGG AACAGTTACG GCATCGCCGG
AACCGCCGGT TTACAGGTCT CAAAGTGGCT GCCATGTTAT CGGGCTCGAT ACTGCTCGTC
TATGGCGGAT GGAGAATGTT CGGTAGTCAT CGCGCTACTG TTTTTCAAAC AGCTTACGGA
GAAGTACGTA CTGTCGTATT GCCCGATCAG TCGGTCGTGA CACTGAATGG CAACAGTACC
TTACGCTATG CCGGTAAATG GGATGGTAAC AGTAATCGTG AAGTATGGGT AGAAGGAGAG
GCTTTTTTCT CCATCAAACC ATCTGCTGTT CCCCGCTCAT TTATGGTACA CACCGCCAGT
GAAATGGATG TGGAAGTACT GGGTACCAGC TTTAACCTCG TAGATCGTCA TGGTCGTATG
CAGGTAGTGC TGAACAGCGG AAAGGTAAAG CTGCACAACA GTAGAACACC GGAAGATGCG
ATCATTATGC AACCGGGAGA TCTTGTTGAA TACAAAGAAC AGGTGCGCAC AAAAGTCAGG
AAGAACACCA ACGCACAAAG CTATTCATCC TGGAAAACAA ACAATCTTCA TTTTGAAAAC
GCCAGCTTCG CGGAACTGGC ACAATTGTTA GAAGACACCT ATGGCGTAAC TGTAGAGATC
AGAGATGCTG CTTTGTTACA GCAACGATTC ACAGGAACTG TACCGGGACA ACAGATTGAT
ATGTTGCTGG GAGGGCTTTC GCAACTATTT CACCTGAAGG TGAGCCATGT TGACAACAGT
GTCATTATTG AGAAGGAAAC TAAATAG
 
Protein sequence
MELFDQSLLH KYEHNQCTPE EYERVLEWFT TPEGREYLET AMTQELDSEK PDMLMSTSQA 
ADLYQRILDT TGQEQLRHRR NRRFTGLKVA AMLSGSILLV YGGWRMFGSH RATVFQTAYG
EVRTVVLPDQ SVVTLNGNST LRYAGKWDGN SNREVWVEGE AFFSIKPSAV PRSFMVHTAS
EMDVEVLGTS FNLVDRHGRM QVVLNSGKVK LHNSRTPEDA IIMQPGDLVE YKEQVRTKVR
KNTNAQSYSS WKTNNLHFEN ASFAELAQLL EDTYGVTVEI RDAALLQQRF TGTVPGQQID
MLLGGLSQLF HLKVSHVDNS VIIEKETK