| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6441 |
|---|
| Symbol | |
|---|
| ID | 8362625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8093710 |
|---|
| End bp | 8094693 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644968569 |
|---|
| Product | Transketolase central region |
|---|
| Protein accession | YP_003126046 |
|---|
| Protein GI | 256425393 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.818323 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCAGA TAGCTTTCAG ACAAGCCTTA CGAGAAGCCA TGCAGGAAGA AATGCGCCGT
GACGATCGCG TTTTCCTGAT GGGAGAGGAA GTAGCAGAAT ACAATGGAGC CTACAAAGTT
AGCCAGGGAA TGCTGGATGA GTTTGGCCCT AAGAGAGTAA TAGATACTCC CATCGCCGAG
CTGGGTTTCA CTGCTATCGC TGTTGGTGCA GCACAGAATG GTCTTCGCCC GATCGTTGAA
TTTATGACTT GGAACTTCGC CGTACTGGCA CTGGACCAGA TCCTGAATAC AGCTTCTAAA
ATGCTGGCAA TGAGTGGTGG ACAGGTAGGT TGTCCTATCG TTTTCCGTGG ACCGAACGGT
TCCGCAGGTC AGCTGGGTGC ACAGCACTCC ACTGCCTTCG AAAGCTACTA TGCGAACATC
CCGGGTTTAA AAGTTATATC AGTATCTAAC CCATATGATG GTAAAGGTCT CCTGAAAGCA
GCTATCCGTG ATAACGATCC GGTTGTTTTC ATGGAAAGCG AGGTAGGTTA TGGCGATATG
GGTGATGTTC CTGAAGAAGA ATACATCATT CCAATCGGTA AAGCAGATAT CAAACGTGCT
GGTAAAGACG TAACCATCGT TTCTTTCAAC AAAATGATGA AAGTTGCGCT GAGTGCTGCT
GAAGAACTGG CTAAAGAAGG TATCGAGGCT GAAGTAATCG ACCTGCGTAC GATCCGTCCG
CTGGACTGGT TCACTATCCT GGAATCTGTT AAGAAAACCA ACCGTCTGGT GATCGTTGAA
GAACAGTGGC CATTCGCCAG CGTTTCTTCT GAGATCTCTT ACCGTATCCA GAAGGAAGGT
TTCGACTACC TGGATGCTCC GATCCGTCGT ATCACTGCAG CTGATGCACC AATGCACTAT
GCGCCGAACC TGGTAAAGGG TTACCTGCCA GACGTTGAAC GCACCGTGAA ACTGGTGAAA
GAAGTAATGT ACATGAAGAA GTAA
|
|---|
| Protein sequence | MRQIAFRQAL REAMQEEMRR DDRVFLMGEE VAEYNGAYKV SQGMLDEFGP KRVIDTPIAE
LGFTAIAVGA AQNGLRPIVE FMTWNFAVLA LDQILNTASK MLAMSGGQVG CPIVFRGPNG
SAGQLGAQHS TAFESYYANI PGLKVISVSN PYDGKGLLKA AIRDNDPVVF MESEVGYGDM
GDVPEEEYII PIGKADIKRA GKDVTIVSFN KMMKVALSAA EELAKEGIEA EVIDLRTIRP
LDWFTILESV KKTNRLVIVE EQWPFASVSS EISYRIQKEG FDYLDAPIRR ITAADAPMHY
APNLVKGYLP DVERTVKLVK EVMYMKK
|
|---|
| |