Gene Cpin_6435 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6435 
Symbol 
ID8362619 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp8087577 
End bp8088062 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content50% 
IMG OID644968563 
ProductCMP/dCMP deaminase zinc-binding 
Protein accessionYP_003126040 
Protein GI256425387 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0295] Cytidine deaminase 
TIGRFAM ID[TIGR01354] cytidine deaminase, homotetrameric 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0667145 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.662331 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACATCC GCAAACACTC TTTCGAATAC CATACTTTTC CTGACAGTGC AGCCTTACCC 
ACTGCCGATC TGCGTTTACT GGAAGAAGCC CGTGAAGTGA CCGCCCAGGC TTATGCTCCA
TATTCTAATT TCTATGTAGG TGCTGCTATA TTACTGGCCA ATGGCATTGT TGTAAGGGGG
ACCAACCAGG AAAACGCCTC TTTTCCTGCC GGTATCTGTG CTGAAAGAGT GGCCCTGTCT
ACAGCTGCAT CGCTGTATCC CGGGGTACCT ATTCTCACAA TTGCTGTCAG TTACCATAAC
CCGAATGGCA GTAATGACGC CCCGATATCT CCCTGTGGCA TCTGCCGTCA GACCCTTTTG
GAGTATGAAG GCCGTCAGCA ACAGGCCATC AGGATCATTA TGGGCGGGCA GACCGGAAAA
GTATTTGTTA TCCCTACAAT CAGACATCTT CTTCCCCTGG CATTCACAGC AGAGGATATG
CAATAA
 
Protein sequence
MDIRKHSFEY HTFPDSAALP TADLRLLEEA REVTAQAYAP YSNFYVGAAI LLANGIVVRG 
TNQENASFPA GICAERVALS TAASLYPGVP ILTIAVSYHN PNGSNDAPIS PCGICRQTLL
EYEGRQQQAI RIIMGGQTGK VFVIPTIRHL LPLAFTAEDM Q