| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6378 |
|---|
| Symbol | |
|---|
| ID | 8362562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 8018821 |
|---|
| End bp | 8019663 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644968506 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003125983 |
|---|
| Protein GI | 256425330 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAC AAAAAGTCTG GTTTGTAACC GGCGCTTCAA AAGGATTTGG GCTCTCTATA
GTAAAGCAAT TACTCGCAAA AGGTGTTCCT GTAGCAGCAA CCACAAGAAA CCTTGCAGAA
CTGAATAAAG CGGTAGGTGA AGATGATAAT TTCCTGCCCC TGGCAGTAGA TCTTACATCT
GAGAAAAGTG TAGAAGATGC CATCGCTGCT ACCGTCAATA AATTCGGACG TGTAGATGTA
GTAGTAAACA ATGCAGGTTA CGGACTGGTA GGCGGTCTGG AAGAATTATC AGATGCAGAA
GGCCGTCAGA ATTTTGACGT GAATGTCTTC GGTTTATTAA ACGTTGTAAG GAAAGCATTG
CCTTATCTGA GAACGCAGGG TTCCGGCCAT ATTATTAACT TCTCTTCTAT CGGCGGACTG
GTTGGTGATT TTCCTGGTTT TGGCATTTAC TGCGCTACTA AGTTTGCAGT AAACGGACTG
ACAGAAGCAT TAGCTACTGA AGTAAAACCT TTTGGTATTC ACGCTACCAT TGTTTCTCCT
GGTTATTTCA GAACAAACTT CCTCGCTTCC GATTCACTGG TGATACCAAA GCATCCTATT
GACGCATATG CCAATGTGCG TGAATCACAA CGTGCACATC AGCAATCAAT AGATGGCAAT
CAGCCGGGCG ATCCTGAGAA AGCAGCAGCA GCGGTAATTA AGATCACGGA CGTGGAAAAC
CCGCCTTTAC ACTTTTTCCT TGGTACTGAT GCGTATGAAC TTGCAGGTAA GAAACTGGAT
GCATTGAGAA ATGAACTGGA AACCTGGAAG GAACTGACTG TCTCTACAGC GATTGAAGCG
TAG
|
|---|
| Protein sequence | MKQQKVWFVT GASKGFGLSI VKQLLAKGVP VAATTRNLAE LNKAVGEDDN FLPLAVDLTS
EKSVEDAIAA TVNKFGRVDV VVNNAGYGLV GGLEELSDAE GRQNFDVNVF GLLNVVRKAL
PYLRTQGSGH IINFSSIGGL VGDFPGFGIY CATKFAVNGL TEALATEVKP FGIHATIVSP
GYFRTNFLAS DSLVIPKHPI DAYANVRESQ RAHQQSIDGN QPGDPEKAAA AVIKITDVEN
PPLHFFLGTD AYELAGKKLD ALRNELETWK ELTVSTAIEA
|
|---|
| |