| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6333 |
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| Symbol | |
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| ID | 8362517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 7969595 |
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| End bp | 7972207 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644968462 |
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| Product | conjugative relaxase domain protein |
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| Protein accession | YP_003125939 |
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| Protein GI | 256425286 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAGAA TGACTCAAAG CCGTTCTGCG GAACAGGCTA AGGATTACCA CAATGATGCC
CTTTTAAAAT CCGATTACTA TTTGAATGAC CAAGAATTAC GCGGGTCGTT CAATGGTCGG
TTGGCGAAGC GTATCGGCAT AAATGGCCCT ACGGACAAAT TCATCTTCGA CGCTCTTTGC
GAAAACATCA ACCCGATAAC CTTAAAGCCC CTTACCTCGC GCAAAAGCAA AGTGCGGACG
GTCGGCTATG ATCTGACGTT CTGTTGTCCG AAGTCGGTTA GCCTCCTTCA TGCCTTCGCA
AAAAATGATT CGATCCTAAC CGTGTTCCGT AATGCCGTTC ATCGCACGAT GAGAGACATA
GAGAAAGACG TGCAAACCCG TGTCAGGAAA AAAGGAAAGG ATGAGAACCG TATCACGAGC
GAATTACTTT ATGCCGATTT TGTCCACCAG ACCTCCAGAG CCGTAAATCG GGAAATGCCA
GACCCATTTT TGCATTGCCA TTGCTACACC TTTAACGCCA CATATGACCC TATCGAAAAG
CAATTCAAGG CGGTTCAGTT TCGCGACACG ATGCGCGACC TTCCCTATTA TGAAGCACTC
TTTCATAAGC GGTTAGCCGA CGGCTTGATG AAATTGGGGT ACAAGATACG CCCAACAAAA
AGCTCTTTTG AGGTGGTCGG TGTAGATCCG AAACTGATTC GTCTGTTCTC CAAGCGTACC
AACGAAATCG AACAGATCGC CAAAGAGAAG AATATTACGG ATGCCAAGGA ACTCGACAAG
ATCGGGGCGC GGAGCCGTGC CAAAAAGCAA AAAGGGTTAT CGATGGATGA CCTTAGAACC
GATTGGGAAA GACAAATAAA GACGCTCAAC CTGCCGAGCG TCAATACGTC TATCGTTTCC
GTTCAAGAAA GCACGTCGAA TGCTCTCACC GCCGATGAAT GTATCGATCA TTCGTTACTG
CATCATTTTG AAAGAAATTC CGTCGTCCAA GATCGCAAGA TCCTCGCCAA AGCCTACAAG
TTCGGAATCG ATGAAAAGAA TGTTTCGATT ACGCAAATAA ACACAGCGTT TAAGAAGCAT
CCCAATATTA TCAACGTTAA GCAGGATAAT CGCGTGTTGT GTACGTTGGA CAGCGTTTTG
CGTGAAGAAA CACGCATGGT CAAACTTGCC CATGACGGCA AAGACACGTT TGCGCCTCTC
TATATTTCCG CACCTACCTT ATCTCTAAAG GGAGAGCAAG GACGTGCGGC CCGCCATGTT
CTGACGACAA AAGATAAAGT GTCGATCATC ATGGGCGGTG CGGGTACGGG TAAAACGATC
CTTATGCAAG AAACCGTTTC AATGATCGAA AAGACAGGGA AAAAGGTCAT CGTCGTCGCC
CCGACGGCGA AAGCTTCACG CGATGTCTTA AAAAAGGAAG GTTTTGCGGA TGCCCAAACC
GTCGCCAAAT TGCTTGCCTC TCCTGAACTG CAAAAATATT TGCAGGATCA AATCTTATGG
GTTGATGAAT CGGGATTGTT AGGCACAAAA GACATGACGG CCCTTTTAGA GCTTGCAACC
ACGTTTAACA CGCGCGTCAT CTTAAGCGGC GACGTGCGCC AACATGCAGC CGTCGCCTAT
GGGGATTCCC TACGTATTTT GATGGATGCG GGAATCGTTC CCGTAACGGT CAACAAGATT
CATCGTCAGC GTAAACAACC CTATCGTGAC GCGGTATACG ATTTATCAAA AGGCCATGTA
ATGGCGGCAT TCGGCAAGAT GGAGCGAATG GGGGCAATCA AAACCTGTGA TGAAAATTAC
GCTTCCCTTA CCAATGACTA TATGACGGCT ATCGGTCAGG GTAAAACCGT TCTTGTCGTA
TCGCCTACCC ATGCGCAAGG CGAAACGGTG ACGAAAGCTA TTCGTCAGAC ATTACGCCAT
GCTGGAAAGC TACACGGAAA AGAAAAGCCC TTTACCCGCC TTGTCAACCT GAACTTAACC
GAAGCGGAAA AAGCGGATAG CCGATATTTT GATTCAGGTC AGATTTTGCA ATTCAATCAG
AATTGTAAAG GAATCACGCA CGGTACAACC TTGTCCATCA TGCAAGTAGA GGGCAAATGT
CTCGTCATGA AAGACGAAAA AGGGAAAAAC GTTACCGCTT CGCTCAATGA TCTAAAGGGT
TTCGAGGTCT ATCGCAAAGA GAAAATCGAC CTCTTAAAAG GCGACGTCAT TACCGTGACA
CGCAACGGTG TTGATAAGAA AAAACAATCG TTAAACAACG GACAGGTTTT AGAAGTGGTT
TCAACTGCCA AAGGTGATAT TATAGCCCGA CACCCTGACA CCAAAGCCCT TTATACCTTA
CCTCAACAAT TCGGGCATCT GGCTTATGCA TACTGCGTTA CGAGTCATGC AAGCCAAGGC
ATGACGGTGG ATGAAGTCTT TATTTCGCAA CCAGCATCAA CCTTTGCAGC CGCTTCTATG
CAACAATTCT ATGTAAGTGC ATCACGTGGA CGTGATTGCT TACATGTTTA TACTGACAAT
AAGGAAGCTT TGCTTGATCG TATTTCTCAG TCTGGTGAGC GTATGAGTGC ATTGGAACTT
ATAAAGAGTT TTCCATCATT CACGCCTTGT TAA
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| Protein sequence | MLRMTQSRSA EQAKDYHNDA LLKSDYYLND QELRGSFNGR LAKRIGINGP TDKFIFDALC
ENINPITLKP LTSRKSKVRT VGYDLTFCCP KSVSLLHAFA KNDSILTVFR NAVHRTMRDI
EKDVQTRVRK KGKDENRITS ELLYADFVHQ TSRAVNREMP DPFLHCHCYT FNATYDPIEK
QFKAVQFRDT MRDLPYYEAL FHKRLADGLM KLGYKIRPTK SSFEVVGVDP KLIRLFSKRT
NEIEQIAKEK NITDAKELDK IGARSRAKKQ KGLSMDDLRT DWERQIKTLN LPSVNTSIVS
VQESTSNALT ADECIDHSLL HHFERNSVVQ DRKILAKAYK FGIDEKNVSI TQINTAFKKH
PNIINVKQDN RVLCTLDSVL REETRMVKLA HDGKDTFAPL YISAPTLSLK GEQGRAARHV
LTTKDKVSII MGGAGTGKTI LMQETVSMIE KTGKKVIVVA PTAKASRDVL KKEGFADAQT
VAKLLASPEL QKYLQDQILW VDESGLLGTK DMTALLELAT TFNTRVILSG DVRQHAAVAY
GDSLRILMDA GIVPVTVNKI HRQRKQPYRD AVYDLSKGHV MAAFGKMERM GAIKTCDENY
ASLTNDYMTA IGQGKTVLVV SPTHAQGETV TKAIRQTLRH AGKLHGKEKP FTRLVNLNLT
EAEKADSRYF DSGQILQFNQ NCKGITHGTT LSIMQVEGKC LVMKDEKGKN VTASLNDLKG
FEVYRKEKID LLKGDVITVT RNGVDKKKQS LNNGQVLEVV STAKGDIIAR HPDTKALYTL
PQQFGHLAYA YCVTSHASQG MTVDEVFISQ PASTFAAASM QQFYVSASRG RDCLHVYTDN
KEALLDRISQ SGERMSALEL IKSFPSFTPC
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