| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6326 |
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| Symbol | |
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| ID | 8362510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 7963702 |
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| End bp | 7965468 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644968455 |
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| Product | TRAG family protein |
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| Protein accession | YP_003125932 |
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| Protein GI | 256425279 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAATG AACGATCAAA GGGCTTATTG AATATAAGCC AAAAGGAAGT CGTTGACTTT
TTCGACAAGG AAACGGATTC AGAAGGAGTC ATGAAACTCT TTTTAATGTT CGTAGGTGTG
ACCTTGACGC CTATTACCCT GCTCGGGGCG CTGATCTTTT ATAAAAAAGG CTATAAGCGC
TTCATGGAGG GGGAACATCC TCGTCTTCAC GACTTACCGC CTATTGTAAG TCTTGGAATG
ATAATAGGCG CTATCTCAAT ATGGGGGAGC CTGTTTTTCT TCGCGAGCTA TATGCATTCT
TTTTTTTATC TGATTTTCGG AGAGGCGGTA GACCATAATT CTTTCTATAT CTATGCTTTC
ACCGGAATTA ATATTGTTCT CACCGTTGCT GTCTTTCTAT GGTTTCAAAG ATGGCGTTTG
AAGGCAGCAA AATACGCCGC TGATACCAAG CGACACGGTA CGGCGCGTTT TGCAAAGCCT
GAAGAGTTAC AGCCTTATGA AGCGCCCAAA GGGTTTTATA TCGGACAAGG TACATACTAC
AACAAGCCCG GTCATTTGTT GTCTGTGGCG GGAACGAGGG GCGGTAAGGG TGTGAACCTC
ATTTTACAAA ACCTTCTGAT GCCACATTTA TTCAAAGGTT CATGGGTTGT TATTGATCCT
AAAGGGGAGC TTTTGGCTAT TTCCAAATCT GCACAGCTCG CCGCAGGCCG CAAGGTTGTT
GTTCTCAATC CGTGGCAATT ACTAGGTTTA AATGGGGTTT CTTACAACCC GCTCGATCTT
CTCAAAAACG ATTGGCTCAA CATGGCCGAT GATGTGGAAA TGTTGGCAGA AGCCATTATC
CCCGCAGATC CCGATAGTGA AAATTCACAT TGGAGCCTTC GCGCCAGAAC CTTTATCTCA
GGGTTGTTGC TGCATCTTGT AACGACAGCG CCCGAAGACG AGCGCCACTT AGGAACCCTC
TGGCAATGGC TTCGGCTAGA GAATGACAAA TGGATAGAAC TTCTGGCTGA TATGTCGTTG
AATAATGACC CGAACGCTGG AGAAATCGTT AGAGCAACGG CGAATGAGAT TATTAGTCTC
ATGAAAATGT CCGATAAAGA ATACGGGTCT GTCATGTCAT CGGCGCAAAA ACACACCGAT
TTTATTAAAT CGCCTGCTTT ACGGGAAGCG TTGAAAGCGT CCACGGATTT TAAAGCGGAA
GATTTGGCTT CTGGCAACGT AACTGTTTAT GTGTGTATTC CATTTGATCG CCTTAAAAGT
CACAATGCTT GGCTGCGGTT GGTGGTGATT TCTCTTATGC GTTCGGTTAT CCGTAACCCT
AAGAAAGACG TTTGTTTCCT ATTAGATGAA GCCTATGCTT TTGGCTACCA TAGCGAGATT
GATATGGCTC TAGGCGCTTA TGCGGGATTT GGTATTCATG TGTGGTCGAT CTTCCAGACC
CTTGTTCAGA TCAAGAAGAT ATACGGGGAT AATTGGGAAA ATTTCATCGC AAATTCTTCC
GTGAGACATT TCTTTAATAT ATCGGACAAT TTTTCAGCAG AATACATTTC AACAATGTTC
GGCCAGACGT CCGTTCCTGA ATATGACGAA AAAGGAGAAC TGAAAGGAGC AACGGCCCGA
CCTCTGGTGA CTAATGATGA ACTACGGCGC ACATCAGGCG AGGTCATTTA CTCGGTTATC
GACCAGCTTT CACCGGCACA GATTCCCAAG CATCCATATT ACACAATGGA TTTACCAGCC
GACCCTAATC CTTATTACAA AGGATAG
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| Protein sequence | MQNERSKGLL NISQKEVVDF FDKETDSEGV MKLFLMFVGV TLTPITLLGA LIFYKKGYKR
FMEGEHPRLH DLPPIVSLGM IIGAISIWGS LFFFASYMHS FFYLIFGEAV DHNSFYIYAF
TGINIVLTVA VFLWFQRWRL KAAKYAADTK RHGTARFAKP EELQPYEAPK GFYIGQGTYY
NKPGHLLSVA GTRGGKGVNL ILQNLLMPHL FKGSWVVIDP KGELLAISKS AQLAAGRKVV
VLNPWQLLGL NGVSYNPLDL LKNDWLNMAD DVEMLAEAII PADPDSENSH WSLRARTFIS
GLLLHLVTTA PEDERHLGTL WQWLRLENDK WIELLADMSL NNDPNAGEIV RATANEIISL
MKMSDKEYGS VMSSAQKHTD FIKSPALREA LKASTDFKAE DLASGNVTVY VCIPFDRLKS
HNAWLRLVVI SLMRSVIRNP KKDVCFLLDE AYAFGYHSEI DMALGAYAGF GIHVWSIFQT
LVQIKKIYGD NWENFIANSS VRHFFNISDN FSAEYISTMF GQTSVPEYDE KGELKGATAR
PLVTNDELRR TSGEVIYSVI DQLSPAQIPK HPYYTMDLPA DPNPYYKG
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