Gene Cpin_6257 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_6257 
Symbol 
ID8362439 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7885461 
End bp7886660 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content49% 
IMG OID644968385 
Productaminotransferase class I and II 
Protein accessionYP_003125864 
Protein GI256425211 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0436] Aspartate/tyrosine/aromatic aminotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.110785 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAAA TGGAACTCGC CGAAAGGCTG TCGAGGATAT CCGAGCCTCA AACGATTAAG 
ATGGCTAAAT TAAGCCGTGA GCTGAAAGCC CAGGGTATAG ACATTGTAGA TCTGAGCATA
GGAGAACCTG ACTTTGATAC ACCTGCCCAC ATCAGGGAGG CTGCTAAGAA AGCTATCGAC
GATGGCTTTA CACATTATAC ACCTGTTGCC GGTATTCCTG ACCTGCGCCA GGCGGTCGTG
CATAAGCTGA AGCGTGATAA CGGACTGGAA TACACGCCTG AACAGATCAT TGTATCCACA
GGCGCGAAAC AGAGCATTGC CAACACCGTA TTGAGCGTTA TTAATCCCGG TGATGAAGTG
ATCATCCCTA CGCCTTACTG GGTTACTTAT TCTGAACTGG TAAAACTGTG TCAGGGTGAG
GTCGTATTCG TTCCATGCAG CATCGAAAAC AAATACAAGA TCACGCCTGC ACAGCTGGAA
GCGGCTATCA CGCCGAAAAC AAAACTGTTC ATGTTCTCCT CTCCCTGCAA CCCCACCGGT
TCAGTATACA GCAAGGAAGA ACTGAAAGCG CTGGCAGACG TATTCGCAAA ATATCCCCAG
ATCTACGTCA TGGCAGATGA GATCTATGAA TATATCAACT ATGTTGGTAA GCATGAAAGC
ATCGCCCAGT TTGAAGGTAT GCAGGAACGC ACCATCATCA TCAACGGTCT GAGTAAAGGT
TTTGCGATGA CCGGATGGCG TATCGGTTAT CTGGCCGCTC CGAAAGCAGT TGCAAAAGCT
GCGGAGAATA TCCAGAGCCA GTTCACTTCC GCCACCAGCT CTATTACCCA GAAAGCCGGC
GTAGCCGCAC TGACCGGGGA TCTCAGCACG GCGCATGCCA TGCTGGAAGA GTTCAGAAAA
AGACGTGCTT TTGTATTTGA ACAACTGAGC AGCACACCAG GTCTGCAACT GATAGAACCG
GATGGCGCCT TCTATATGTT CCCCGATGTA AGCGCCTTCT TTGGCAAATC TTACGAAGGA
ACTGTGATCA GTAACGCAGA CGATATGTGT ATGTACCTGC TGCACAAAGT GCATGTATCT
ACCGTAACCG GCGCTGCATT TGAACAGCCG AACTGTATCC GCCTCTCCTA TGCAACTTCC
ATGGCAAAAC TGGAAGAAGG TATGAAACGG CTGAAAGCAG GATTAGCACA ACTCAGCTAA
 
Protein sequence
MKQMELAERL SRISEPQTIK MAKLSRELKA QGIDIVDLSI GEPDFDTPAH IREAAKKAID 
DGFTHYTPVA GIPDLRQAVV HKLKRDNGLE YTPEQIIVST GAKQSIANTV LSVINPGDEV
IIPTPYWVTY SELVKLCQGE VVFVPCSIEN KYKITPAQLE AAITPKTKLF MFSSPCNPTG
SVYSKEELKA LADVFAKYPQ IYVMADEIYE YINYVGKHES IAQFEGMQER TIIINGLSKG
FAMTGWRIGY LAAPKAVAKA AENIQSQFTS ATSSITQKAG VAALTGDLST AHAMLEEFRK
RRAFVFEQLS STPGLQLIEP DGAFYMFPDV SAFFGKSYEG TVISNADDMC MYLLHKVHVS
TVTGAAFEQP NCIRLSYATS MAKLEEGMKR LKAGLAQLS