| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6233 |
|---|
| Symbol | |
|---|
| ID | 8362415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7854065 |
|---|
| End bp | 7855396 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644968361 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_003125840 |
|---|
| Protein GI | 256425187 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0410154 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTCG AAGTAAGTAC GCGGCAAATA ATAAAAATTG CTGCCCCTAT ATGCCTGGCT
CTCATTATTC CACAGATAAA TCACATGACA AATACCGCTT TCCTGGGTCG TCTGGGGGAG
TTTCAGCTGG CGGCCAACGG CATCGCCGGT ATTTATTATC TCGTGATGTA TATGGTAGCT
TATGGATTGA ATAATGGTCT GCAGGTCCTG ATCGCCCGCC GGGCAGGTCA GCTGAATACA
GAAGGAATCG GCCGCCTCTT CTCCAATGGC CTGCTGCTCG GCCTGTGTTC TTCCTTCCTG
GTCATCGCCA TTACCCTGCT CCTGGCGCCC TGGTTCTTCT CAAAAAGTCT TCATAATCAA
CAGATATACG CAGCCGCATT GTCCTTTATC CGCATCCGCA TCTGGGGGCT CCCCTTCCTG
ATGATGCTAA GTATGGCCAA TGCCTTCTAC ATCGGCAGCG GTAATTCCAA AGTACTGGCA
GTGACTTCTT TATGCCAGGA AGTTGTCAAT ATTTTCTTTG ATTATACCCT GATATTCGGC
AAACTGGGAT TACCTGCCCT CGGATTAAAC GGTGCTGCAG TCGCCTCTGT CATTGCAGAA
GGCACGGGTA TGACCGTCGC ATATACGATC CTCTTTGGTA TGGGATTTCA CAAACGCTTC
CTGCTGTTTA AATACCTCAG ACCCTCCTGG ACAATTATGC GTAGTATCCT GACCATTTCT
GCACCACTGA TCGTGCAATT CCTGTTCAGT ATCGGCAGCT GGTTTATCTT CTTCATTTTT
ATTGAGCATC TGGGCGAGCG CCCCCTGGCT ATTTCCAATA TGCTTAGAAG TATCTTCGGA
TTCTTTGGCG TCTTTACCTG GTCCCTGGCC GCAACCTGTA ACACCATGGT CAGTAATATC
ATTGGTCAGG GAAAAACGGC GCAGGTATTC GGGGTGATCC GTAAAATTGT CACGATCAGT
TTACTATGTG CAGTAACGGT GTGCATACTG GTAAACCTTT TCCCATACAA TATCCTGCGG
ATCTACACAA CGGATATGCA GCTGATAGGA GATGCCATTC CCTCCGTCCG TATTATTACC
CTGAGCACCC TCCTGATGGC AATATCCGGG GTCGTATTGA GTGCGGTGAC AGGTACCGGC
AATACAAAGA TCAATCTCGG TATTGAATTC GCCGCAGTAG TGGGTTACCT GTTATATTGC
AATATTGTAG TGGAACAATG GCGCAGCCCT TTATATGTAG CCTGGCTGGC CGATTTCTTC
TACTGGACCA TCATCTTTGT ACTTTGCTTC TTCTATCTGC GAAGCGAAAA ATGGAAATCT
AAGTCTATCT GA
|
|---|
| Protein sequence | MQFEVSTRQI IKIAAPICLA LIIPQINHMT NTAFLGRLGE FQLAANGIAG IYYLVMYMVA
YGLNNGLQVL IARRAGQLNT EGIGRLFSNG LLLGLCSSFL VIAITLLLAP WFFSKSLHNQ
QIYAAALSFI RIRIWGLPFL MMLSMANAFY IGSGNSKVLA VTSLCQEVVN IFFDYTLIFG
KLGLPALGLN GAAVASVIAE GTGMTVAYTI LFGMGFHKRF LLFKYLRPSW TIMRSILTIS
APLIVQFLFS IGSWFIFFIF IEHLGERPLA ISNMLRSIFG FFGVFTWSLA ATCNTMVSNI
IGQGKTAQVF GVIRKIVTIS LLCAVTVCIL VNLFPYNILR IYTTDMQLIG DAIPSVRIIT
LSTLLMAISG VVLSAVTGTG NTKINLGIEF AAVVGYLLYC NIVVEQWRSP LYVAWLADFF
YWTIIFVLCF FYLRSEKWKS KSI
|
|---|
| |