Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6173 |
Symbol | |
ID | 8362355 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 7791580 |
End bp | 7793424 |
Gene Length | 1845 bp |
Protein Length | 614 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644968303 |
Product | glycoside hydrolase family 2 sugar binding |
Protein accession | YP_003125782 |
Protein GI | 256425129 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.873861 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.124893 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAC TAGTATCCTG TCTGCTGTCG TCTGTGTGTC TCGCTACGGC AGCAAATGCC CAGCAGCAAC AGTGGCATCT GATCAAAGAC AGAATTGTAA CCCAATGGGC TGAGAAGGTA GATCCTAAAG CACCTTTGCC CGAGTATCCA CGTCCGATGC TGGTTAGAAG TAATAACTGG CAAAATCTCA ATGGTCTCTG GAGTTATGCA ATTACAGGTA AGTCTCAACC GCAACCATCT ACTTATGATG GAAGCATCCT TGTTCCTTTT GCTGTGGAGT CAGCATTGTC AGGCGTAGGC CGCAATGTTG GAAAAGACAG TTTGTTGTGG TATAAAACCA CTATCAGTAT TCCTGCTTCT ATGAAGAACA AGGAAGTACT GCTGCATTTC GGTGCTGTGG ACTGGCAAAC AGAGGTTTTT GTGAATGGCG CCAGCGTAGG TAAACACGAA GGTGGTTATG ATCCTTTCAG CTTTAACATT ACTTCTTTCC TGAAGAAAGG TGGTAAACAG GAAGTGACAG TACGCGTGTG GGACCCGACA GATGACGGTC CGCAGCCCGC GGGTAAACAG GTCGTAAAGC CAGAAGGTAT CTGGTATACA CCTGTAACAG GTATCTGGCA AACGGTATGG CTGGAAGCGG TTCCGAAGAC ATACATCGCC TCTACCAAAC AAACGCCTGA TGTGGATAAA CACACCCTTA CACTGTCTGC GGATGTACAG AATGTGCAGG ATGGCGATAA GCTGAAAATT GAAGTGCTGG AAGGCGATAA GGTGATTGCC CAGCAGGAGG CGGGTGCAAA AGATGCGGCG GTTATTACGA TGTCCAACGA GAAATTATGG TCTCCTTCCA ATCCGTATCT GTACAACCTG AAAGTAACGC TGCTGCGCAA TAATAAACCA GTAGATGAAA TCAAGAGCTA TTTCGCGATG CGTAAGATTT CCATGGCGAA AGATGCGAAA GGCGTACAGC GTATGATGCT GAATAATGAG TTCTTGTTCC AGTATGGTCC ACTGGATCAG GGCTGGTGGC CTGACGGTCT GTATACGCCG CCTACATATG AGGCAATGGT ATACGACATC GATCAGCTGA AAAAAATGGG CTTTAATATG ATCCGAAAAC ACATTAAAGT GGAGCCGGCA ACATATTATA CCTATTGCGA TAAAGCAGGT ATCCTGTTAT GGCAGGATAT GCCAAGCGGT GACAGAGGTA ATGGATGGGA AAACCGTCCG GGTATCTATG ATCATCAGAC GGACAAAGAC CGTAGCGCTG CATCAGAAGG CTATTACCGT AAAGAGTGGA ATGCCATCAT GGACGCTTTG CACAACTATC CGAGTATCGT AGTATGGATT CCATTCAACG AAGCATGGGG TCAGTTCAAA ACGGTTGAGA TCACAGAGTG GACTATGAAG AAAGATCCAT CCAGACTGGT GAACAGCGCG AGTGGTGGTA ACTTCTACAT CACTGGTCAT ATCCTGGATC TGCATAATTA TCCGCATCCA GCGATGCCAA GTCCGGAGCT GTTTGGCGAA AAACAGATCC TGGTATTGGG AGAGTTTGGC GGATTAGGTT TACCGGTAGA AGGACATACC TGGCAGCAAA ACAAGAACTG GGGCTATCAG TCATTCAAGA CCTCTGATGA TATGTTCAAA CGTTATAATG AATTTACGCA AAGGATCTCG CAGCTGATCC CGTTAGGTTT ATCTGCGGCG GTATATACAC AGACAACCGA TGTGGAAGGT GAGATCAATG GTTTTATGAC TTATGACCGT AAAGTGGATA AGTTCCCGGT GGATAAGATG AAAGAAGCGA ATACGAAGTT GTATAATCCG GCACTGGCGA AATAA
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Protein sequence | MKKLVSCLLS SVCLATAANA QQQQWHLIKD RIVTQWAEKV DPKAPLPEYP RPMLVRSNNW QNLNGLWSYA ITGKSQPQPS TYDGSILVPF AVESALSGVG RNVGKDSLLW YKTTISIPAS MKNKEVLLHF GAVDWQTEVF VNGASVGKHE GGYDPFSFNI TSFLKKGGKQ EVTVRVWDPT DDGPQPAGKQ VVKPEGIWYT PVTGIWQTVW LEAVPKTYIA STKQTPDVDK HTLTLSADVQ NVQDGDKLKI EVLEGDKVIA QQEAGAKDAA VITMSNEKLW SPSNPYLYNL KVTLLRNNKP VDEIKSYFAM RKISMAKDAK GVQRMMLNNE FLFQYGPLDQ GWWPDGLYTP PTYEAMVYDI DQLKKMGFNM IRKHIKVEPA TYYTYCDKAG ILLWQDMPSG DRGNGWENRP GIYDHQTDKD RSAASEGYYR KEWNAIMDAL HNYPSIVVWI PFNEAWGQFK TVEITEWTMK KDPSRLVNSA SGGNFYITGH ILDLHNYPHP AMPSPELFGE KQILVLGEFG GLGLPVEGHT WQQNKNWGYQ SFKTSDDMFK RYNEFTQRIS QLIPLGLSAA VYTQTTDVEG EINGFMTYDR KVDKFPVDKM KEANTKLYNP ALAK
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