| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6166 |
|---|
| Symbol | |
|---|
| ID | 8362348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7778294 |
|---|
| End bp | 7781227 |
|---|
| Gene Length | 2934 bp |
|---|
| Protein Length | 977 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644968296 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003125775 |
|---|
| Protein GI | 256425122 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.679734 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.00200292 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA CAAAAAGGGG ATTCCACGGT ATCATCTATC TTATTGTTGC CTTGTTAGCC
GGACTGTCAG CATCAGCCCA GCAAACTGTC AGGGGGATAC TCCGGTCTGC CACCGGAGAA
GCTATTCCGG GAGCAACTAT TGCAGTAAAA AAAGCAGGCA CCGTCGCCAT TGCCGATTCG
GCTGGCCATT TTTCCATCAA AGCACTGACA GGCGATACCC TTGTCGTAAG CTTTGTAGGT
TTTAAAAGGC AGGAAATCAG GGTACCTTCC GCCGGCTCCT TAAACATCAT TCTCCAGGAG
TCCGTATCAA CGCTCAGCGA CGTCGTCGTG ATCGGATACG GTACCCGGGC ACAGAAAGAC
CTGACCGGCT CCATCGCTAC CGTCAGTTCG AAGGACTTCC AGCAGGGCGC CATCACTACC
CCCGATCAAC TGGTAACCGG TAAAGTCGCC GGCGTAGTCA TTACGCCCAA CAGCGGCGCG
CCGGGTGCAG GTGGTACTAT CCGTATCAGA GGGGGTACCT CCCTTAATGC GAGTAATAAC
CCGCTGATTG TGGTAGACGG GGTACCGCTG ACCAGCGAAG GGGTCTCTGG CGTCGCCAAC
CCACTCAGTC TGATCAACCC GAACGATATT GAGTCGTTTA ACATCCTCAA AGACGCCTCC
GCTACCGCCA TCTATGGTAA CAGAGCCTCC AACGGGGTGA TCATCATTAC GACCAAAAGC
GGCTCTTCCG GCAAACTGAA AGTCACTTTC AATACCGTCC TGTCCGAATC CATCAGAAGA
AACGAAATCG GCGTCCTGAA CGGCGACGAA TTCCGTCACC TGATCGCCCA AAAGGGTAAC
GACGAAGAAA AAGCACTTGT AGGCACCGCC AACACCGACT GGCAGGACCA GATCTTTCAG
AAAGCCTTTG GAGGGGACTA TAACCTCGGG CTCTCCGGTG GTATCAAAAA ACTGCCCTAT
CGACTGTCCA TCGGTCATAC CTACCAGGAT GGTATCCTGA AAACCAGCAA CATCAAACGG
ACTTCCGCTT CCCTGAACCT GAATCCATCT TTCTTCGACA ACACCTTAAA GGTCACTATC
AACCTGAAAG GCGTTTACCA GAAATCCCGG TTTGCCAATG AAGGTGCTAT CGGGGCAGCC
ATCGGATTCG ATCCTACCCA GCCGGTATAT GCCAGCAATA AGTATGGTAA TTTCTTCGAA
TGGCTGAACG CTTCTACCGG TATTCCTATC GAACTGGCCA CCAAAAACCC ACTGGGTCAG
CTATTGTTGA ATTCCAGCCT CAGCGATGTA TACAGAAGCA TCGGCAATAT CAAAGTGGAC
TATAAACTAC CTTTCCTGCC TGCGCTGACA GCCACCGCCA ATGCCGGCTA TGATATCTCT
AAAACGGAAG GAAACGGCTT TGTACCGGCT TATGCCGCCC TCTCCTACCA GCGGGGTGGT
TCCATGACGG AATACTCCCA ACGGAGAAAA GACAAACTCT TTGATTTCTA TCTGACCTAT
AACAAGGAAC TGAAAGAACT GGCCAGTAAG TTTGATGTCA CTGCCGGTTA CTCCTACCAG
GATTTCTTCA GAGGTAGCCC TGCCTACCCG GTAAGAAACG CCAACGGTGA TGTGATCAAT
ATTCCTGTGG CAGATTCCAG CCGCAATACA CTGGTCTCTT TCTTCGCCCG CGCTAACTAT
AGCTTACTGG ATCGCTACCT GCTGACAGCC TCCTTCCGAC GGGATGGTTC TTCCCGTTTC
GGTCCAGCCA ATCACTGGGG TGACTTTTCC TCCATCGCAC TGGCCTGGCG GATTAAAGAG
GAAAGCTTCC TGAAAAACGC CCATCTCTTC TCCGACCTGA AAGTACGTGT AGGTTACGGT
GTCACCGGTA ATCAGGATAT CGGTCTGGCA TATCCTTTCC TGCCCATTTA TACCCAGGGA
GCTAATAATG TACAATATCC TTTCGGCAAC GGTGCTTACT ACACCTACCG TGCAGAAGCC
TATGACCCGA ATATCAGATG GGAACAGACT GCCGCCTGGA ATGCTGGTCT GGACTATGGC
TTCCTGAACA ACAGGATAAC TGGTACCCTC GATTTCTATT ATAAAAAGAC CAAAGACCTG
CTGGCTGATA TTCCTACCGC TGCCGGTGCG AATCTCAGTA ACCACGTGCT GACCAACGTC
GGTAATATTG AAAGTAAAGG TGTTGAACTC GCTATCAATG CCACCATCAT CGAAAAGCAG
CGACTGAACT GGAAAGCCGG TTTCAATATC AGCTACAACC AGAACAAAAT CCTGAAACTG
TCCAATGTCT CCGATTCCAG CTCTGAAGGT ATCCTCACAG GCGGTATCTC CGGCGGTACA
GGCAACAGTA TCCAGATCAA CACCGTTGGC TATTCACCAC AAACCTTCTA TGTCTATAAA
CAGGTGTATG GCCCCGATGG CCGTCCGGTA GAAGGCGTCT ATGAGAAACC CGGCGAAGGC
AGCAACATGT TCTACAGATA TAAATCAGCG AACCCTAAAC TGACCATGGG CTTTACCTCC
CAGTTCAATT ACGATCACTG GGACCTCTCC TTCGTATTAC GCAGTAACAT CGGCAACTAT
GTATACAACA ACATCCGCTC TGCCGGTGGT GCTTACAATA GTATAAGGAC ATCCATGGGC
TACATGGGTA ACGTAAACAG GGACTATCTG AATGCGGGTT TCAGCAACAG CCAGTATTCA
TCCGACTACT ATGTGGAAAA CGCTTCTTTC CTGCGGATGG ACAATTTATC CCTGGGTTAC
AACTTCGGAA AGATCCTGCG GAATACAGCT TCTCTGCGTG TAAATGCCAT CGTGCAGAAT
GTATTTGTCG TTACAAAATA CAGCGGACTC GATCCGGAGA TCTTCAGTGG TATTGACAAC
AATCCTTATC CAAAACCACG CATCTATTCT CTCGGTATCA ACATCGCTTA TTAA
|
|---|
| Protein sequence | MKITKRGFHG IIYLIVALLA GLSASAQQTV RGILRSATGE AIPGATIAVK KAGTVAIADS
AGHFSIKALT GDTLVVSFVG FKRQEIRVPS AGSLNIILQE SVSTLSDVVV IGYGTRAQKD
LTGSIATVSS KDFQQGAITT PDQLVTGKVA GVVITPNSGA PGAGGTIRIR GGTSLNASNN
PLIVVDGVPL TSEGVSGVAN PLSLINPNDI ESFNILKDAS ATAIYGNRAS NGVIIITTKS
GSSGKLKVTF NTVLSESIRR NEIGVLNGDE FRHLIAQKGN DEEKALVGTA NTDWQDQIFQ
KAFGGDYNLG LSGGIKKLPY RLSIGHTYQD GILKTSNIKR TSASLNLNPS FFDNTLKVTI
NLKGVYQKSR FANEGAIGAA IGFDPTQPVY ASNKYGNFFE WLNASTGIPI ELATKNPLGQ
LLLNSSLSDV YRSIGNIKVD YKLPFLPALT ATANAGYDIS KTEGNGFVPA YAALSYQRGG
SMTEYSQRRK DKLFDFYLTY NKELKELASK FDVTAGYSYQ DFFRGSPAYP VRNANGDVIN
IPVADSSRNT LVSFFARANY SLLDRYLLTA SFRRDGSSRF GPANHWGDFS SIALAWRIKE
ESFLKNAHLF SDLKVRVGYG VTGNQDIGLA YPFLPIYTQG ANNVQYPFGN GAYYTYRAEA
YDPNIRWEQT AAWNAGLDYG FLNNRITGTL DFYYKKTKDL LADIPTAAGA NLSNHVLTNV
GNIESKGVEL AINATIIEKQ RLNWKAGFNI SYNQNKILKL SNVSDSSSEG ILTGGISGGT
GNSIQINTVG YSPQTFYVYK QVYGPDGRPV EGVYEKPGEG SNMFYRYKSA NPKLTMGFTS
QFNYDHWDLS FVLRSNIGNY VYNNIRSAGG AYNSIRTSMG YMGNVNRDYL NAGFSNSQYS
SDYYVENASF LRMDNLSLGY NFGKILRNTA SLRVNAIVQN VFVVTKYSGL DPEIFSGIDN
NPYPKPRIYS LGINIAY
|
|---|
| |