| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6011 |
|---|
| Symbol | |
|---|
| ID | 8362193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7611540 |
|---|
| End bp | 7612709 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644968147 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_003125626 |
|---|
| Protein GI | 256424973 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGACCAAT CAATCAGTTT AAACAAGTTT ATCAGTGATA CCGGATATTG TTCACGTCGT
GAGGCAGACA ATCTCATCAC CTCAGGACGG GTATTATTGA ATGACCGGCC GGCTGCTTTG
GGTAACCGTT ACAAGCCGGG AGACACTGTA GAGGTAGATG GCAGCCTTAT CACTGCTGCC
AAAAAAGAGA AACGGGTATA CCTGGCGCTC AACAAGCCGC CTGGTATCAC TACGACCACA
GAATTGCACA TCAAGGATAA TATTATCAGT TTTGTGAATT ATCCACAGCG AATATTCCCG
ATCGGTCGTC TCGATAAGGA CTCTGAAGGA CTGATTTTCC TTACTAACGA TGGTGATATC
ATCAATAAGA TACTAAGGGC TGCTAACAAT CATGAGAAAG AATATGTCGT AAGGGTGAAC
AAACCTATCG ATACTAACTT TTTGCATCAG ATGTCGCAGG GAGTACCTAT TCTGGATACC
CGGACCCTCC CTTGTAAGGT GCAGATGACG GGGCGTCAGA CCTTTCGTAT CACCCTGACG
CAGGGGCTTA ACCGGCAGAT CAGGCGCATG TGTGAATACC TTGGCTATAC GGTAGTTGGT
TTGCAGCGTG TGCGTATTAT GAATGTACGG CTCGACAAAC TGCCCCTGGG TAAATGGCGC
TATCTCAGTG AGGCTGAAAT CGCATTTATA AAGGAAAGTG TGGCAGATTC CACGAAGGTT
AGTGGTGAAA GTAAACCATC TGGAGCACGT AGGAAGACAG CGAAACCTGT TGAGGAGAAG
GAGCATCTCA GAACTGGTTC TACACCGAAG AATAAGCCCG CTACGGGTCA TAAGCGTGTA
GCAGCACCAG CTAAGCACAG AGAAGAGCAG GAACCTGCTT TTATGCCCAA AAATAAGCCT
TCTGCGGGTC ATAATCGTGC AGCAGCGCCA GCTAAGCACA GGGAACAGCA GGAACCTGCT
TTTACGCCTA AAAATAAGTC TTCGACGCAT AAGCATAAAC CTGCAGATAA AGATAGTAAA
CCTCAAACTG GCAAAGCGAC AGAGAAATCC TGGAAAAAGG AGCATCCTGC ACAAAAATCT
ACGACGTCCC GTAGGGGAAA GCCGGCTGGC GCAGCAAATA ATACAGGTAA AGGAAAAGAA
AAAAAGGACG GTAGGAGAGG AAGGCGGTAA
|
|---|
| Protein sequence | MDQSISLNKF ISDTGYCSRR EADNLITSGR VLLNDRPAAL GNRYKPGDTV EVDGSLITAA
KKEKRVYLAL NKPPGITTTT ELHIKDNIIS FVNYPQRIFP IGRLDKDSEG LIFLTNDGDI
INKILRAANN HEKEYVVRVN KPIDTNFLHQ MSQGVPILDT RTLPCKVQMT GRQTFRITLT
QGLNRQIRRM CEYLGYTVVG LQRVRIMNVR LDKLPLGKWR YLSEAEIAFI KESVADSTKV
SGESKPSGAR RKTAKPVEEK EHLRTGSTPK NKPATGHKRV AAPAKHREEQ EPAFMPKNKP
SAGHNRAAAP AKHREQQEPA FTPKNKSSTH KHKPADKDSK PQTGKATEKS WKKEHPAQKS
TTSRRGKPAG AANNTGKGKE KKDGRRGRR
|
|---|
| |