| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5954 |
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| Symbol | |
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| ID | 8362135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 7560751 |
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| End bp | 7562337 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644968093 |
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| Product | aromatic hydrocarbon degradation membrane protein |
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| Protein accession | YP_003125573 |
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| Protein GI | 256424920 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000110154 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.037452 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAAA GAATGGTGGT TGCCATTGCA TTGACAGGAA CATGCGTTTC CGTTCATGCG
CAAAATATAG ACGACGCTTT AAGATTCAGC ACCAGTTCAC CTTCAGGTAC GACAAGGGGT
CAGTCAATAG GTAGTGCGCT GGGAGCGCTG GGCGGTGAAC CGTCTTCTAT GTATGTTAAC
CCTGCTTCCG TAGGCTTTTT CAGAACAAAC GATTTCTCCT TCACAGTAGG CCTTCAGAAT
ATTAACAACA AAGGTACTTA CCTGGGTACG ACCGACAGCG ACAACAAGTT TATCCCACTG
GTCTCCAATA TCTCCATGAT ATTCGGTGGC CGCAGGAAAA AACCTGACAG CAAATGGCAG
AACTTCAGCT TCGGTCTGGG ACTGAACCGT ACACAGAATT ACAACGAAAG AACTTATTAT
ACCGGTGAGA ACAAGAGTTC TTCCCTCTCC CTGAACTACT ACCTGGATGC AGAAGCAGCA
GGTGTAACTA ATCCTGACGA TCAGCTGGGT GGCGAGCACA CCATCGGTTC ATTGGCACAT
ACTTCTGCGC TTGCGTATCA GACAGGTCTG ATATCTCCTT ACCTGGATAG TAATGACCAG
CCGGACGGAT CTTTCTACTC TGCAGCACAG GCGACAGACA GAAGCATCTT TGTTAAACAG
GAAAACATCA TCAATGCCAG AGGCGGTTCC AATGAAATCT CATTCGCTTT CGGCGCTAAC
TATGATGATA AGATGTACCT CGGTGGTAGC ATCAATATTC CGAATATTAC CTACAAACAT
GACAGGACCT GGAAGGAGAC AAATATGAAC ACCACTCCGA CAGACCTGAA TAGCTTTGAA
GTAACTGAAT CACTGAAATC AGAAGGAACC GGTATCAACC TGAAAATAGG CGGTATCTTT
AAACCGATCA GATCACTCAA CCTCGGCGCT ACTTTCCACA GCCCGTCCTG GATGACATTC
ACTGATACTT ATAGAACAGA CATGACGACT TCCACCAAAA CACTGGGCGT ACGTACTTTC
TCTTCTATAG ATACTTATGA CGGATTCTCT GACGAATCCA AATACTCACT CAGAACACCA
TGGAAAGGCG TATTAAGTGC AACTTACCTG TTCAGTCCTT CAGCAGATAC CAGAAAGCCA
ACCGGCTTCC TCTCCTTCGA CTATGAGTAT ATGGATTACA CATCTATGAG ACTCCGTTTC
CGTAATGACC AGTCTACCGA CAAAGAAGAT TCAGATGCAC GTAATGAGGC AATTAAAGCG
ACTTACAAAG GCGTTTCAAA CATCCGTGTA GGTGGTGAAC TGAAATTGCA TGTAATTGCC
TTCAGATTGG GTTATTCATT ATACGCCAGT CCTTATAAGA ATGGCGCTAT CGACGGTAAG
CGTGAGTACT ATACCGGCGG TATCGGTTAC AGAAACCGTG GTTTCTATAT GGATCTGGGT
CTGGTATGGG GTAACAATAC CCGTTCTAAT CAGCCGTACG TGCTGGCTTC CAACGCTGCT
CCTGATGATC ATTATACTAC TCCGGCAGCT GCCTCTATTA AGAGCCAGTC TACCAACGTT
AATGCGACTT TCGGGTGGAA GTTCTAA
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| Protein sequence | MIKRMVVAIA LTGTCVSVHA QNIDDALRFS TSSPSGTTRG QSIGSALGAL GGEPSSMYVN
PASVGFFRTN DFSFTVGLQN INNKGTYLGT TDSDNKFIPL VSNISMIFGG RRKKPDSKWQ
NFSFGLGLNR TQNYNERTYY TGENKSSSLS LNYYLDAEAA GVTNPDDQLG GEHTIGSLAH
TSALAYQTGL ISPYLDSNDQ PDGSFYSAAQ ATDRSIFVKQ ENIINARGGS NEISFAFGAN
YDDKMYLGGS INIPNITYKH DRTWKETNMN TTPTDLNSFE VTESLKSEGT GINLKIGGIF
KPIRSLNLGA TFHSPSWMTF TDTYRTDMTT STKTLGVRTF SSIDTYDGFS DESKYSLRTP
WKGVLSATYL FSPSADTRKP TGFLSFDYEY MDYTSMRLRF RNDQSTDKED SDARNEAIKA
TYKGVSNIRV GGELKLHVIA FRLGYSLYAS PYKNGAIDGK REYYTGGIGY RNRGFYMDLG
LVWGNNTRSN QPYVLASNAA PDDHYTTPAA ASIKSQSTNV NATFGWKF
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