Gene Cpin_5934 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5934 
Symbol 
ID8362115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand- 
Start bp7534231 
End bp7535433 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content49% 
IMG OID644968073 
Product3,4-dihydroxy-2-butanone 4-phosphate synthase 
Protein accessionYP_003125553 
Protein GI256424900 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase 
TIGRFAM ID[TIGR00505] GTP cyclohydrolase II
[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.148722 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAGATA CAATAGAATC AGCCATAGAA GATATCAGGA ATGGTAAGCT GGTAATAGTC 
GTAGATGATG AAGACAGGGA GAATGAGGGT GATTTTGTTA CAGCAGCAAG GAACGTTACA 
CCGGAGATCA TCAATTTCAT GAGCCGTTAC GGCCGTGGTT TAATATGTGC CCCCCTGGTG 
GAGGAGCGTT GCGAGGAACT GAAACTGGAA ATGATGGTGC GCGATAATAC CGCCCTGCAC 
CAGACTCCCT TTACCGTATC CGTTGACCTC CTGGGTCACG GCTGCACCAC CGGCATCTCT 
GCACATGACC GCGCCAAGAC CGTACAGGCC CTGATTGATC CTAATACCCG TCCGGAAGAA 
CTGGGCAAGC CAGGACATAT CTTCCCCCTG AAAGCAAAAA GTGGTGGCGT ACTTCGCCGT 
ACCGGCCATA CCGAAGCAAC GATCGACCTG GCCAGACTGG CTGGTTTCGA ACCTGCCGGC 
GTACTGGTGG AAATCATGAA CGAAGATGGT TCCATGGCAC GTCTCCCGGA ATTGCGGGAA 
ATAGCCGACC AGTTTAACCT GAAACTGGTT TCCATAAAAG ACCTGATCGA ATACCGCCTC 
GCAAAGGAAA CCCTGATCGA GGAACAGGTA ACCGTAAACA TGCCGACTGA ATACGGTGAT 
TTCGAACTGG TTGCTTTTAA ACAGCTTAAC TCAGGTGAGC TGCATATGGC CCTGAAAAAA 
GGTACATGGG AGAAAGGCGA ACCCGTACTG GTGCGCATCC ACTCTTCCTG CGTAACCGGC 
GATATCCTTC ATTCCCTCCG CTGTGACTGT GGCGAACAGC TGCACAAAGC CATGGAAATG 
GTAGAACGCG AAGGAAAAGG TCTGATTCTG TACATGAACC AGGAAGGTCG TGGTATCGGT 
TTGCTTAACA AACTGAAAGC CTATAAGCTC CAGGAAGAAG GCCGCGATAC TGTGCAGGCT 
AACCTGGAAC TGGGTTTCAA AATGGATGAA CGCGACTATG GCGTTGGAGC ACAGATCCTT 
CGTCATATGA ACATCTCCAA AATGCGCCTG ATTACCAATA ACCCACGTAA AAGAGCGGGT 
CTGAATGGAT ACGGTCTTGA AATCGTGGAA AATGTAGCAA TTGAAGTACA TCCGAATCCG 
CATAACGAAT TCTATCTCAA GACAAAACGT GATAAGTTAG GTCACGAGAT CCTGAAAGGG 
TAA
 
Protein sequence
MLDTIESAIE DIRNGKLVIV VDDEDRENEG DFVTAARNVT PEIINFMSRY GRGLICAPLV 
EERCEELKLE MMVRDNTALH QTPFTVSVDL LGHGCTTGIS AHDRAKTVQA LIDPNTRPEE 
LGKPGHIFPL KAKSGGVLRR TGHTEATIDL ARLAGFEPAG VLVEIMNEDG SMARLPELRE 
IADQFNLKLV SIKDLIEYRL AKETLIEEQV TVNMPTEYGD FELVAFKQLN SGELHMALKK 
GTWEKGEPVL VRIHSSCVTG DILHSLRCDC GEQLHKAMEM VEREGKGLIL YMNQEGRGIG 
LLNKLKAYKL QEEGRDTVQA NLELGFKMDE RDYGVGAQIL RHMNISKMRL ITNNPRKRAG 
LNGYGLEIVE NVAIEVHPNP HNEFYLKTKR DKLGHEILKG