| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5903 |
|---|
| Symbol | |
|---|
| ID | 8362084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7497298 |
|---|
| End bp | 7498863 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644968042 |
|---|
| Product | glycoside hydrolase family 28 |
|---|
| Protein accession | YP_003125522 |
|---|
| Protein GI | 256424869 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.672596 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT TACTGACTGC CACCCTGCTA TGCTTCAGCC TGTCGGCCGC TGCCCAGTTG
AACGTCCATG TCCCCACCAT CGATGAAGTA GGCGCCACCA GGCTTCCCGC TAACATAGCT
CCCGTGCATG CCCCTTTTTC AGTACCGGCT TTTAAAAAAC CCATATTCCC GAAATACACG
ATCACCATCA AGGGACAGGG AAGCGCACAA ACAAAAGAGA TCCAGCAGGC CATTGACGCC
GTTAGCAAAA AAGGCGGCGG AACAGTTATC ATACCTGCGG GCAACTGGCA TTCAGGCCGT
ATCGCGTTGA AATCCAACGT CAATCTCCAC CTGGAAGAAA ACGCGGTACT GGAGTTCGGT
GGAGAAATAA GAGATTATCT CCCTGTGGTC TTCACCCGTA CGGAAGGGGT CGAGGTCATG
TCTCTCGGCG CCTGTATCTA TGCGAACGGA CAACATAATA TTGCCGTAAC CGGCAAAGGG
AAACTGGTTG GTCCGCCGGC CAATTGTCCT GTCAGAAAAC AGGTCATGCG CCAGGATGTG
ATAGAAAATG TCGTAGCTGC CAATAAACCG GTCTCGCAGC GGATATATGA TGGCCATGAT
GGCGGTCCTG TGTACCTGCC AATGTTCGTT TCTGCCGTCA ACTGTAAAAA TGTTTATTTA
GAGGGCTTGC AACTGGAAAA TACCCCTTTC TGGAACATTG TCCCTATCTA TTGCGATAAC
GTCATTATAC GGGGTATAAC CGTCAATTCT GTCGGTATTC CCAGCGGTGA CGGTATTGAC
ATTGAATCCA GCAAAAATGT ACTGATAGAA TATTGTACGC TGAACTGCGG CGATGACTGC
TTTACATTAA AAGCCGGTCG CGGAGAGGAC GGTTTACGTA TCGGCAAACC AACAGAAAAC
GTCGTTATCC GCTATTCACT GGCACGGCAG GGACACGGTG GCATCACCGT TGGCAGCGAA
ACAGCTGCCA TGATCCGGAA CCTGTATGTA CATGATGTAG TTTTTGACGA TACAGAAGTT
GGTCTCCGTT TTAAAACAAG ACGTCCGCGC GGCGGTGGTG GTGAAAACCT GCACTATGAA
CGTATCCGTA TGCGCCTGCG GCTCGATGCT TTCAGATGGG ATATGCTGGG CGCAAGAATG
TATGTAGGCG CGCTGGCTGA TCGCCTGCCC GCCTTACCTG TCAATAAACT GACGCCGGTA
TACAGGAACA TTTACGCTAA AGACATTGTG GTAGACAGCG CGAGAGCGCT GGTAAGAGTG
GATGGTATTC CGGAATCACC TATGACAGGC TTTCACCTGC AAAATGTAGA AGCGCATTGT
ACGAAGTTCT TACAGAGTAT AGACGCCAAT GTTATCAGTA TCTCCAACGC AAACATATAT
ACAACAGATT CCGCTGTAAC ACTGACCGAT AGCAGGAATA TTACTTTTGA TAAGGTACAC
GTTATCAACC CCGCCAATAA AGTCGTGGTG AATATTTCCG GAGAACTGAC CGATAATATA
CGCTTTAGTA ATTCTGTACC GGAGAAACCC GAAGGCTGGG AAACCGCTAC CTGGAAGAAG
AATTAA
|
|---|
| Protein sequence | MKKLLTATLL CFSLSAAAQL NVHVPTIDEV GATRLPANIA PVHAPFSVPA FKKPIFPKYT
ITIKGQGSAQ TKEIQQAIDA VSKKGGGTVI IPAGNWHSGR IALKSNVNLH LEENAVLEFG
GEIRDYLPVV FTRTEGVEVM SLGACIYANG QHNIAVTGKG KLVGPPANCP VRKQVMRQDV
IENVVAANKP VSQRIYDGHD GGPVYLPMFV SAVNCKNVYL EGLQLENTPF WNIVPIYCDN
VIIRGITVNS VGIPSGDGID IESSKNVLIE YCTLNCGDDC FTLKAGRGED GLRIGKPTEN
VVIRYSLARQ GHGGITVGSE TAAMIRNLYV HDVVFDDTEV GLRFKTRRPR GGGGENLHYE
RIRMRLRLDA FRWDMLGARM YVGALADRLP ALPVNKLTPV YRNIYAKDIV VDSARALVRV
DGIPESPMTG FHLQNVEAHC TKFLQSIDAN VISISNANIY TTDSAVTLTD SRNITFDKVH
VINPANKVVV NISGELTDNI RFSNSVPEKP EGWETATWKK N
|
|---|
| |