Gene Cpin_5887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5887 
Symbol 
ID8362068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7480678 
End bp7481457 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content49% 
IMG OID644968026 
Productprotein of unknown function DUF224 cysteine-rich region domain protein 
Protein accessionYP_003125506 
Protein GI256424853 
COG category[C] Energy production and conversion 
COG ID[COG0247] Fe-S oxidoreductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAATAA AAACGATGGC CGAATACTTC GCCAATGGCG AAACCCCTGA AATCCTGTTT 
TGGGTGGGCT GTGCCGGCAG TTTTGATCAA CGTGCGCAGA AAATCACCAA AGCCTTTGCC
ACTATCCTTG ATAAAGTCGG AATCCGTTTT GCAATACTCG GTAAGGAAGA AAGCTGCACC
GGCGATCCGG CGCGCAGGGC GGGCAATGAA TTCATCTTCC AGATGATGGC CCAGAACAAT
ATCGCCATAC TGAATGGTTA TGAAGTGAAA AAGATCGTTA CGGCATGTCC CCATTGCTTT
AATACCCTCC GCAATGAATA CCCTGAACTG GGTGGACATT ACGAAGTCAT ACACCATGCT
ACCTATCTGC AACAACTGAT TGACGAAGGG AAGATCCGGA TGCAGGAAGG CGGTACCTTC
AAAGGCCGCA AGATCACTTA TCACGATTCC TGTTATCTTG GCCGTGCCAA TAACATTTAT
GAAGCCCCCC GCAAGGTACT GGAAGCTCTG GACACAGAAC TGGTAGAGAT GAAACGTTGC
CGTAGCAATG GCCTCTGCTG TGGCGCCGGT GGCGCACAGA TGTTCAAGGA GGAAGAAAAA
GGCAGCACCC GCATCAACTT TGAACGTGGG AAAGAAGCAA TAGGAACAGG CGCGTCTGTG
ATTGCTGCGA ATTGTCCTTT CTGTATGACG ATGCTGACAG ACGGTGTGAA AGAACAAGGT
AAAGAAGACA GCGTACAGGT ACTGGATATC GCGGAAATGA TCGCACAACA GATGCAATAA
 
Protein sequence
MQIKTMAEYF ANGETPEILF WVGCAGSFDQ RAQKITKAFA TILDKVGIRF AILGKEESCT 
GDPARRAGNE FIFQMMAQNN IAILNGYEVK KIVTACPHCF NTLRNEYPEL GGHYEVIHHA
TYLQQLIDEG KIRMQEGGTF KGRKITYHDS CYLGRANNIY EAPRKVLEAL DTELVEMKRC
RSNGLCCGAG GAQMFKEEEK GSTRINFERG KEAIGTGASV IAANCPFCMT MLTDGVKEQG
KEDSVQVLDI AEMIAQQMQ