| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5870 |
|---|
| Symbol | |
|---|
| ID | 8362050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7462799 |
|---|
| End bp | 7464748 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644968008 |
|---|
| Product | Heparinase II/III family protein |
|---|
| Protein accession | YP_003125489 |
|---|
| Protein GI | 256424836 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTATC TTTTATCCCT TTTGTTGCTG GTGTCGCTGA ATAGTATAAG CAATCGCTCG
GTAGCACAGG AACCCCGAAA CATATTAAGT CATTTTACCC GTCCGCAACT GGAAGCTGCG
CTCATACCTG CTGATCAATG GCATCCTTTT CCATTGGATG CTGCAGGCTG GAAACGTATA
TTACCTGATT CCGTGCAACA GAGTATACTT CGTCAGGCGG AAACCTATCT CAAGATTCCT
TTTGTGGCTA TACCTGCTTC CATGATGATG GAATACCAGA AGAACGGAGA CCGTTCCCGT
TATGAGGAAA TGTCCTTCAG AAAGAGAGAC CAGTTGTTTA CTATGACAGT CGCCGAAGCG
ATTGAGCAGA AGGGGCGTTT TCTGACGGCC ATCGTCAATG GTATCTGGTC GATATGTGAA
GAGAGTTACT GGGGGGCGCC TGGTCACTTA TACCTTCAGA AAGCAGGTAT TGACCTGGTG
GATGTGGAAG ATCCTTCTGT GGATCTCTTT GTCAGTGAAA CAGCGACTGT ACTTGCCCTG
ACTGATTACC TGCTGGGTGC GCAGCTGGAT ACTTATTCCA AGCTGTTGCG AAAACGTATT
TATTATGAAG TGAACCGTCG TATGCTGACG CCATTGGAGA AAGACAGTGA CCGGTACTAT
TATCTGAAAA AGGGAACAAA GGAATATCCC GTTAATAACT GGAATCCCTG GGTGATCAGC
AACTGGATGA CAAGTCTGTT GTTGCTGGAA AAGAGTAATG AACGCCGTGT GTCAGAACTG
GAACATGCCT TACATCTGCT GGACCATTAT ATCAATTTTA TGGGGGAGGA TGGCGCTGTG
GATGAAGGCC CTGTTTACTG GTCGGGTGCT GCCGGCAGGG TGTTTGACGC CCTCACCGTA
TTAGAAAGTG CCACTGGTGG AAAAATAAAG GTCTATGACG CCCCGATCAT CCGTAACATG
GCGTCCTATA TCTATAAAAT GCATATCGCC GGTAATTACT ATATCAATGT GGCGGATGCT
TCTCCGGTGA TTCCTACTGA CGGACTTTTG TTATACCGTA TGGGAAGTTT GATGGGAGAT
CCTGTGATGA GGGACTTCGG CGCCTGGGCA TTTCACAGGT ACCCGATCAG GACGCCTATT
TCCGGTGATT TCGCCAAACC GAGGATGCTT TTCAATATGC AGGCCTGGAT GGATTGCTCC
CGCAGTGAAG GTAAGGAACC AGTTATAACG GACGTCTGGC TGGAAAGTAT TCAGCTCATG
GCAGCAAGCG CAGGAAACGG CCTGCTTGTG GCCAGTCATG GCGGTCATAA CGGCGAAAGC
CATAACCATA ATGATGTGGG CGATTTCATC GTATATGCCG CCGGACAACC TGTTATTATC
GATGCCGGCC TGGGGACTTA TACGGCAAAG ACATTCTCAA AGGAAAGATA CCAGCTCTGG
TATAACAGCT CTGCCTATCA TAACCTGCCT ACGATCAATA ATATTCAGCA GAAGGAGGGA
CGGAAGTTTG GCGCCAGGGA TGTACAATAT CATCAGGACC AGCAGTCAGC CGTTCTGCAG
ATGGATATTG CGGGGGCTTA TCCGCCGGAG GCGGGAGTTG TCCGTTGGGA AAGAGCGGTC
AGGATGGATA AACAGCAGGG CCAGGTAACT GTTACGGATG AATTTACTTT AACAGGCAGC
AGCACGTCGC TTACACAGAC ATTGATGACT GTTTGTCCGG TGGATGTCAG TCAGCGTGGG
ATCATTCTAT TCAAAGTTCA GGGGGCTGCT CCTGTGCAGT TAACATACGA CCCACAGTTA
TGGGAGGTAA AAACAGAACT GCTTCCTTGT AAAGCGCCGG ATGAAAAGCG CCTGACGGAT
AACTGGTCAC GGAAACCGCT GACCCGCATT CTGCTGATGT ATAAGGAGGG GAGCAGCAGT
GGCAGGTATA CGTTTGTTAT AAAGAATTAA
|
|---|
| Protein sequence | MKYLLSLLLL VSLNSISNRS VAQEPRNILS HFTRPQLEAA LIPADQWHPF PLDAAGWKRI
LPDSVQQSIL RQAETYLKIP FVAIPASMMM EYQKNGDRSR YEEMSFRKRD QLFTMTVAEA
IEQKGRFLTA IVNGIWSICE ESYWGAPGHL YLQKAGIDLV DVEDPSVDLF VSETATVLAL
TDYLLGAQLD TYSKLLRKRI YYEVNRRMLT PLEKDSDRYY YLKKGTKEYP VNNWNPWVIS
NWMTSLLLLE KSNERRVSEL EHALHLLDHY INFMGEDGAV DEGPVYWSGA AGRVFDALTV
LESATGGKIK VYDAPIIRNM ASYIYKMHIA GNYYINVADA SPVIPTDGLL LYRMGSLMGD
PVMRDFGAWA FHRYPIRTPI SGDFAKPRML FNMQAWMDCS RSEGKEPVIT DVWLESIQLM
AASAGNGLLV ASHGGHNGES HNHNDVGDFI VYAAGQPVII DAGLGTYTAK TFSKERYQLW
YNSSAYHNLP TINNIQQKEG RKFGARDVQY HQDQQSAVLQ MDIAGAYPPE AGVVRWERAV
RMDKQQGQVT VTDEFTLTGS STSLTQTLMT VCPVDVSQRG IILFKVQGAA PVQLTYDPQL
WEVKTELLPC KAPDEKRLTD NWSRKPLTRI LLMYKEGSSS GRYTFVIKN
|
|---|
| |