| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5866 |
|---|
| Symbol | |
|---|
| ID | 8362046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7457726 |
|---|
| End bp | 7458313 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644968004 |
|---|
| Product | Tail Collar domain protein |
|---|
| Protein accession | YP_003125485 |
|---|
| Protein GI | 256424832 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4675] Microcystin-dependent protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.255471 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.964644 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCAT TCATGGGAAT CATTTTCCTA TTTGGCGAAA GCTTTGCGCC GGTGAACTGG
CATCTTTGCG ATGGCACGCA GATGGCGATC AGCGGAAACG AAGCTTTGTT TAGCCTCCTT
GGGACCACGT ATGGCGGCGA TGGTATGACC ACATTTGCGC TACCCGATCT TAGAGGACGT
ACACCTATCG GTACAGGACA AGGCCCTGGT CTATCCTCCT ATGTGCAGGG CCAGATGGCA
GGTACAGAGC AGCGTACGCT CATCATGACA AACCTGCCTG CGCATAACCA CGTGACGGTA
AGCAACCTGA CGATCAATCC TGCTGCTTCT ACAGCAGCTG CTACTACCAA TATCCCTGGC
AGTACCCTGG TAGAGGCGAC CTTGCCAAAT ATCGGCAGCG GCCCTGCGGC GCAGCCAATC
AAAGGTTATG CAGTAGGCGA TAGCACCGCC ATACTGGCGC CATCAGCAGT ATCAGGTTCT
GTAACCATTG GCATCGCCGG TGGCAGTCAA CCGTTTAGTA TTCAACGCCC ATATCTGGCT
ATGAACTATG GCATAGCGCT ATATGGCATC TATCCAAGCC GGAACTAA
|
|---|
| Protein sequence | MDSFMGIIFL FGESFAPVNW HLCDGTQMAI SGNEALFSLL GTTYGGDGMT TFALPDLRGR
TPIGTGQGPG LSSYVQGQMA GTEQRTLIMT NLPAHNHVTV SNLTINPAAS TAAATTNIPG
STLVEATLPN IGSGPAAQPI KGYAVGDSTA ILAPSAVSGS VTIGIAGGSQ PFSIQRPYLA
MNYGIALYGI YPSRN
|
|---|
| |