| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5852 |
|---|
| Symbol | |
|---|
| ID | 8362032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7436042 |
|---|
| End bp | 7436944 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644967991 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_003125472 |
|---|
| Protein GI | 256424819 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.183412 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTAA CAGGCATGTT CTTTACCCAT ACAATGCAGG CCCAGGATGA ATATACAAAG
GCTATACCGC TACTTTTACA GCAACTGAAA AAAGTGAAGG CTGATACGGG CAGGGTAAGT
CTGCTATTGA AAACAGCGCA CTTTTATATA TTTAAACCTG GTGAACAGGC GGCAGATCTC
GACTCTGCCG TATTATTGGC CCATCAGGCT GAAACCTTAA GTCAAAGCCT GAAATATTCC
AGGGGAGCAG GGTTGAGTTA TCTGGTCATT TCACAGGCAT GGCGGGAAAA AGGGGATACG
GTACAGGGAA GACCTTATGC TGATCAGGCT ATTGCGCAGC TGAGCCGATA TGGTACAAAA
ATGGAACAGG GGAATGCCTG GAAGGAACGT TCGATGTATC CGGGAAATAT AAAGGTGGAT
GAACGTAGTC AGAAGATCTA TTACCAGGAG AGGGCGGTGC AGCTGTATAA AGAATCCGGC
GATAGTCTGA CCTATGCCAA AGAGCTGCTA TTCCTGTCAG AGATTACGGA TAGTGGGGAA
GACCTGGACA TGGCGCTGGA AGCGCTGCGG ATCTTCAAAA ACATAGGCTA TAAAGACCTA
CAGGGTGTTT ACTATCTGAT AGGGAGCCAG TATTCTGTGC GGAATAACCC GATCGAGGCG
ATCCGGTACT GTGAGATGGC GGTGGCGGTG GCGGAAGAAA GAGATAGCTC TATGCAGTTA
TGTACAGTGT ACAACAGAAT GGGGCTTGCC TATTATGAGA TAAATGAGCG GGAGAAAGCA
AAGGAGTTTT TTCTCAAAGC ATTAGCGGTG GCAGAGCGAT ATCGGGATAT GGATGCAATC
TGGACATTGG TGCCGAATGT TACTGCGGGA TCAATGATAA AAATGAACGG ATACAGTATC
TGA
|
|---|
| Protein sequence | MILTGMFFTH TMQAQDEYTK AIPLLLQQLK KVKADTGRVS LLLKTAHFYI FKPGEQAADL
DSAVLLAHQA ETLSQSLKYS RGAGLSYLVI SQAWREKGDT VQGRPYADQA IAQLSRYGTK
MEQGNAWKER SMYPGNIKVD ERSQKIYYQE RAVQLYKESG DSLTYAKELL FLSEITDSGE
DLDMALEALR IFKNIGYKDL QGVYYLIGSQ YSVRNNPIEA IRYCEMAVAV AEERDSSMQL
CTVYNRMGLA YYEINEREKA KEFFLKALAV AERYRDMDAI WTLVPNVTAG SMIKMNGYSI
|
|---|
| |