| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5834 |
|---|
| Symbol | |
|---|
| ID | 8362014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7412583 |
|---|
| End bp | 7413203 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644967973 |
|---|
| Product | PKD domain-containing protein |
|---|
| Protein accession | YP_003125454 |
|---|
| Protein GI | 256424801 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.552498 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.42039 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTATA ACAACAATGC AATTCAAGCC AAAATCGATA TGAACATGAA GATTTACAAA
CTAACCAACA TTAAAGCACT GGTCATCCTG GCGCTGATAA TGGCGGTTCT CGCAGGATGC
GACAAAAAGA AAGAACGTAT CTATGAATTA CTGCCTCCTG ATCCTGAAGT TGAAATGGAC
GTAACTGATG GTAACATTGG TATGACCGTG AGCATTGAAA ACACAGGTGG ACCAAATGCC
GGTGAAGGAT CAAGAAAATT AATAGATAAT GATCTTAGCT CTAAATTCCT CATTTTCTCG
TTTGAGCCAA CATTCTATAT CCAGCTGGAA TTCGATGCTC CTGAAAGAGT AGATGCGTAT
ACATTCACTT CTGCCAACGA CGCTGACGGA AGAGATCCTA AAAACTGGAA AATACTCGGA
TCAAATGATC TGACTGAATG GAAAGAACTT GACAGCAAAA CCGATCAGGC ATTTACGGAA
AGAAAGCAAA CTATTCGTTT CGAATATACC AATGCCGACT CATACAAGTA CTACCGTCTT
GCTATCTCTG CCTTAAAAGG TGGTACCAGC GGTCTCTTTC AGATGGCTGA ATGGCGTTTA
ATAAAAAGAC CTAAACAATA A
|
|---|
| Protein sequence | MSYNNNAIQA KIDMNMKIYK LTNIKALVIL ALIMAVLAGC DKKKERIYEL LPPDPEVEMD
VTDGNIGMTV SIENTGGPNA GEGSRKLIDN DLSSKFLIFS FEPTFYIQLE FDAPERVDAY
TFTSANDADG RDPKNWKILG SNDLTEWKEL DSKTDQAFTE RKQTIRFEYT NADSYKYYRL
AISALKGGTS GLFQMAEWRL IKRPKQ
|
|---|
| |