| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5812 |
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| Symbol | |
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| ID | 8361992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 7385413 |
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| End bp | 7386891 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644967951 |
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| Product | DEAD/DEAH box helicase domain protein |
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| Protein accession | YP_003125432 |
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| Protein GI | 256424779 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.441599 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00900105 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTGTCAGC ATCATGCACA AAAAGGACTT GTTCCAGCTG ACAGCCTTAC CACTATTGAT
CATAAAAAAT TAACTATTTT GTCATTTGAA CAGTTAGGGC TCATTGAGCC GCTGCTTAAG
GCCCTGGATA ACGAGGGTTA TACCGCTCCC ACGCCCATTC AGCAGCAAGC CATCCCCCAT
GTACTTGATA CGAGGGATTT ACTGGGTTGC GCCCAGACCG GCACTGGTAA AACAGCTGCG
TTTGCCATTC CCCTGCTTCA ATTAATGCAT CAGGACCAAC AGGCCCAGCA ACGCAAAGGC
CTTCGAAATA TCAAAGCGCT TATCCTCACG CCTACCCGTG AACTGGCTAT CCAGATCCAG
GAAAGCTTTA CCGCCTACGG TAAGTTCCTC GACCTGAAAA GCCTGGTGAT CTTTGGTGGT
GTATCACAAC ACCCGCAAAC AGAAGCACTG AAAAAAGGCG TAGATATCCT GATTGCAACA
CCCGGCCGTC TGCTGGACCT GATCAGTCAG AACTATATCA CACTCAGAGA TATTAAATAC
TTCGTACTGG ATGAAGCAGA CAGAATGCTG GACATGGGCT TCGTACACGA CGTACAACGC
GTGATCGTAA AACTCCCTGA ACAGCGTCAG TCACTCTTCT TCTCTGCTAC CATGCCTCCG
GAAATACAGA CGCTCGCAAA AGCGATTCTG CGTAACAATC CGGCCAAAGT GGAAGTAACA
CCGGTATCCT CTACCGCCGA AACGATCACA CAGTCCATGT ACTTTGTCAA TAAAAATGAT
AAACGTAACC TGCTGCTGCA TATACTCAAG GATAAAGCCA TCAAAACATT GCTGGTATTT
ACCCGTACCA AACATGGTGC AGACAGAGTA GTGAAAGACC TGCACAAAGC AGAAATCACC
GCAGAAGCAA TCCATGGTAA CAAATCACAG AATGCCCGTC AGCGTGCGCT GAATAATTTC
AAATCACAGC AGACCCGCGT ACTCGTAGCG ACAGACATCG CCGCAAGAGG TATCGACATC
GACGAACTCA CACACGTGGT GAACTACGAA CTGCCAAACG TACCTGAAAC ATACGTACAC
CGTATCGGTC GTACTGGTCG CGCAGGTGCC GATGGTATCG CGATCTCTTT CTGCGAACCG
GAAGAAAAAG CCTTCCTGAA AGATATCCTG AAACTGATCT CCCGCGAGAT TCCGGTTGAG
ACCGAACACC CGTTTCATAA CGGCGACAGC ATGGCATTGC CTGCACCAAA ACCAGCTCCA
CAGCAGAAAC CAAAACAACA ACATCCAAGA GATAAAAAAG GTGGTTTCTC CAGGAACAGG
CAAGGTGTGG TACAGTCAAG AGATGCAAGA CCTGGCGCAG GTGCAGGAAA GCCGAATAGC
GGTAAACCGA ATGGTGGCAG ACCACAAGGC GGTAAACCCA AAGATGGTAA TGGAAACAGT
GCAAGAAGGG AAAGACCGCA AGGGATGAAG AATTACTAG
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| Protein sequence | MCQHHAQKGL VPADSLTTID HKKLTILSFE QLGLIEPLLK ALDNEGYTAP TPIQQQAIPH
VLDTRDLLGC AQTGTGKTAA FAIPLLQLMH QDQQAQQRKG LRNIKALILT PTRELAIQIQ
ESFTAYGKFL DLKSLVIFGG VSQHPQTEAL KKGVDILIAT PGRLLDLISQ NYITLRDIKY
FVLDEADRML DMGFVHDVQR VIVKLPEQRQ SLFFSATMPP EIQTLAKAIL RNNPAKVEVT
PVSSTAETIT QSMYFVNKND KRNLLLHILK DKAIKTLLVF TRTKHGADRV VKDLHKAEIT
AEAIHGNKSQ NARQRALNNF KSQQTRVLVA TDIAARGIDI DELTHVVNYE LPNVPETYVH
RIGRTGRAGA DGIAISFCEP EEKAFLKDIL KLISREIPVE TEHPFHNGDS MALPAPKPAP
QQKPKQQHPR DKKGGFSRNR QGVVQSRDAR PGAGAGKPNS GKPNGGRPQG GKPKDGNGNS
ARRERPQGMK NY
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