| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5749 |
|---|
| Symbol | |
|---|
| ID | 8361929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7314246 |
|---|
| End bp | 7315388 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644967890 |
|---|
| Product | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen |
|---|
| Protein accession | YP_003125371 |
|---|
| Protein GI | 256424718 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1225] Peroxiredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.566272 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.459715 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA CTTTTTTGCT CTTTGCGGCC CTGATACCAA TGCTGGCAAA GTCTCAATCT
AAAAATACTT TTACTATTAC CGGTAAGATC GGTAATCTGG ACCCTAATGC ACGGGTATAT
CTGGACTGGA CCGATGTGCT TAATGACGGT GGAAAGGAAG ATTCTGTGGA TGTTGTCAAC
GGGACTTTTA AATTTACCGG AGAACTGTCG GGGGTGGCTA CCTGCCGCAT GGCATTGGCG
CATCATGGAG ATGGAAAGAT GAAGGCGGTG TATGCCGGAG ATGCGATCTA TTTCAATTTC
GGACCTGAGA ACTTCACGAT CACTTCTAAA GATTCCCTGG CAAATGCAGT GTTCAAAGGT
TCTAAAGTCC ATGATCAGGA AGACGCTTAT AATAAAAAAA TAGGTGGGCA GATTATGGCG
ATCACCAAAA ATGCCAACTA TGAGTTTAAT GCAGGTACAC CTGAGCAGCG CGCTGATTCT
AATTTCCTGA AAGAAGTAGA CATGCGTTTC CGCAAACGTG TGGGAGACAG GAATGCTGCA
CAGCTGCAAT TTGCAAAGGA TAATCCTAAT TCTGTATTCG GCCTGATCGC GCTGTCCGAG
TATACGAATA TGTCGAAGAA TATGGAGGTT GTAACGCCGG TTTATAATGC ATTGAATGCA
AAACTGCGTA ATTCCAAGAA AGGGCTGGAA CTTGATAAGC GTATCAAATC AGTGAAGCTG
ACCACTCCGG GGGCAGAAGC GCCAAACTTT ACTATGAAAG ATACGAATGG TAATCCTGTC
TCTCTGAAAG ACCTGAGAGG TAAGACCGTG TTGCTGGAGT TCTGGGCAAG CTGGTGCAGC
CCATGCCGTG CTGAAAACCC AAATCTGAAA GCGCAATATG CGATGTATAA AGAGAAAGGT
TTTGAGATCC TGGGTGTATC ATTGGATAGT GATAAGAAGA AATGGGAAGA GGCGATCGCA
AAGGATGGTA TTCCATGGAT CCATGTATCA GACCTGAAAG GCTGGGGTAA CGAAGTGGGC
ATCCTGTATG GTGTAACTGG TGTACCGGCA GGTTTCCTGA TCAGCCCTGA AGGCAAGATC
ATCGGTAATG ACCTGAGAGG TGAATCACTC AACAAGAAAC TGGCAGAACT GCTGAATAAA
TAA
|
|---|
| Protein sequence | MKKTFLLFAA LIPMLAKSQS KNTFTITGKI GNLDPNARVY LDWTDVLNDG GKEDSVDVVN
GTFKFTGELS GVATCRMALA HHGDGKMKAV YAGDAIYFNF GPENFTITSK DSLANAVFKG
SKVHDQEDAY NKKIGGQIMA ITKNANYEFN AGTPEQRADS NFLKEVDMRF RKRVGDRNAA
QLQFAKDNPN SVFGLIALSE YTNMSKNMEV VTPVYNALNA KLRNSKKGLE LDKRIKSVKL
TTPGAEAPNF TMKDTNGNPV SLKDLRGKTV LLEFWASWCS PCRAENPNLK AQYAMYKEKG
FEILGVSLDS DKKKWEEAIA KDGIPWIHVS DLKGWGNEVG ILYGVTGVPA GFLISPEGKI
IGNDLRGESL NKKLAELLNK
|
|---|
| |