| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5696 |
|---|
| Symbol | |
|---|
| ID | 8361876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7264866 |
|---|
| End bp | 7265771 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967839 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003125320 |
|---|
| Protein GI | 256424667 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.673835 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.549107 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAA TACCTTCGCC CATCATATAT AGAAGTATCT CCGAGTTTAT GCGGGACCTG
GATCTGCCTA AACCGCTGCA TCCGCTGATC GCCCTGGTGA ACTATGATGC AGAGAAAGTC
GGCCACGATC TCGTCGGTCA CAGCTTTATG ATCGACTTTT ACAAGATCTC CTTTAAACGG
GACTTCAGCG GTCATATAAG ATACGGCCAG GACTACTATG ATTTTGAAGA AGGAGGCATG
GCTTTTTTAG CGCCCAACCA GGTAGTCACT ATGTCCGGAG AAGAAAGCTG CCTCGATGGT
TATATATTGT TGTTTCACGC CGACCTGATC CGGAATTACC CTTTAGGGAA GACGATCCAG
CAGTATGGCT TCTTCACTTA TGCAGTAAAG GAAGCCCTCT TCCTGTCTGA TAAGGAAAAG
AAAAAGATCG ACGGCCTGTT TGCCAACATC GCCGACGAAC TGGACAACAA CACAGACGCC
TTTAGCCAGG ACGTACTGGT TTCTCAGATC GAACTACTGC TCAACTACAG CAATCGCTTT
TACAACCGGC AGTTCCTGAC GCGTAAAGCC ATTCACCATG ACCTGATCAC CCAGATGAAT
ACCTACCTGG AATCCCGCTT TGCGGATCAG TCAGGTGGTA TACCTACCGT TCCGGAAGTA
GCAGGCCATC TACAGGTGTC GCCCAGATAC CTGACAGATA TGCTCCGGTC ATTAACCGGA
CAAAGCGCAC AACAGCATAT CCATGACCGG CTCATAGAAA GAGCGAAAAT GATTTTAAGC
ACCACCCGGC TAACCATCGC CGAAGTCGCG TACCAACTGG GATTTGAACA CCCCCAGTCT
TTTAATAAGC TGTTTAAACG CCACACCAAC CTGGCGCCAA ATGTTTTCAG AAAATCCTTT
AACTGA
|
|---|
| Protein sequence | MKAIPSPIIY RSISEFMRDL DLPKPLHPLI ALVNYDAEKV GHDLVGHSFM IDFYKISFKR
DFSGHIRYGQ DYYDFEEGGM AFLAPNQVVT MSGEESCLDG YILLFHADLI RNYPLGKTIQ
QYGFFTYAVK EALFLSDKEK KKIDGLFANI ADELDNNTDA FSQDVLVSQI ELLLNYSNRF
YNRQFLTRKA IHHDLITQMN TYLESRFADQ SGGIPTVPEV AGHLQVSPRY LTDMLRSLTG
QSAQQHIHDR LIERAKMILS TTRLTIAEVA YQLGFEHPQS FNKLFKRHTN LAPNVFRKSF
N
|
|---|
| |