| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5680 |
|---|
| Symbol | |
|---|
| ID | 8361860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7245430 |
|---|
| End bp | 7246710 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644967823 |
|---|
| Product | Epoxide hydrolase domain protein |
|---|
| Protein accession | YP_003125304 |
|---|
| Protein GI | 256424651 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0817727 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA GTAAAATTAT CATGGTGGCT GCGATGCTGG TAAGCGTCGC TACGATGGAA
GCGAAAACGA GTCATGCACA AACTGTAGCA ACAACGAATA GGGTATCTGC TGAGAGTATC
CGACCTTTTA AAGTACATGT TGAACAACAG GAATTAGATG ATCTTATACG GAGGGTGAAG
GCGACGAAAT TTCCGGATAA AGAAACGGTA GGTGATATTT CAGAGGGGGT GCCGTTAAAT
ACCTTGCAGG CGCTGGCGAA GTATTGGGGT AACGGTTATG ACTGGCGTAA GGCGGAAGCA
AAACTGAATG CCTTTCCACA ATTTATGACG ACGATCGATG GTGTTGACAT TCATTTTATT
CATGTACGTT CGAAAGAGAA GAATGCATTA CCAATAATAT TGACACACGG ATGGCCGGGT
TCTATCTTTG AGTTTCTGAA AGTAATAGAT CCGCTGACTA ATCCGACTGC TTATGGCGGA
AAACCAACAG ATGCTTTTGA TGTAATTATA CCTTCTATGC CGGGTTACGG TTTCTCCGGT
AAACCTACTG CTACTGGCTG GGGACCTGAG CGTATTGCAA GTGCCTGGAT CACTTTAATG
GATCGTCTGG GTTACAAGAA ATATGTAGCG CAAGGTGGAG ACTGGGGCGC GATTATCACT
GATCAGATGG CATTACAGGC GCCAAAAGCT CTGATCGGTA TACATACGAA TATGCCAGGT
GCTGTTCCTG CGGATATTGA TAAAGCAACA CATGCTGGTA CACCTGCTCC GGCCGGACTC
TCGGCAGATG AACAGAAAGC TTATGGTCAG CTGACATTCC TGTACAATCA TGTTTATTAT
GCGTATTACA TGCATTCCCG TCCGCAGTCG CTGGCTGGTT TAGCGGATTC TCCTACCGGA
TTGGCAGCAT TCCTCCTGGA TCATGATGCG CGTAGTCTGG AGCTGATTTC CCGTGTTTTC
GAAGGAAAGA AGGAAGGGCT GACAAAGGAT GATGTACTGG ACAATATCTC TCTTTACTGG
CTGACAAATA CCGGTGTTTC TGCGGCACGT CTGTACAAGG AAAATAACCT TGATTATTTT
AGTCCGAAGG GTGTGAAGAT TCCGGTTGCG GTGAGTGCAT TCCCTGATGA ACTGTATCAG
GCGCCAAAGA AATGGGCGGA ACAAGCTTAT TCAAACCTGA TCTATTATAA CAGACCTAAT
GCAGGCGGAC ACTTTGCTGC ATGGGAACAA CCGAAGCTAT TCAGTGAAGA ACTGCGTGCA
TCTTTTCAAT CTTTAAGATA A
|
|---|
| Protein sequence | MKKSKIIMVA AMLVSVATME AKTSHAQTVA TTNRVSAESI RPFKVHVEQQ ELDDLIRRVK
ATKFPDKETV GDISEGVPLN TLQALAKYWG NGYDWRKAEA KLNAFPQFMT TIDGVDIHFI
HVRSKEKNAL PIILTHGWPG SIFEFLKVID PLTNPTAYGG KPTDAFDVII PSMPGYGFSG
KPTATGWGPE RIASAWITLM DRLGYKKYVA QGGDWGAIIT DQMALQAPKA LIGIHTNMPG
AVPADIDKAT HAGTPAPAGL SADEQKAYGQ LTFLYNHVYY AYYMHSRPQS LAGLADSPTG
LAAFLLDHDA RSLELISRVF EGKKEGLTKD DVLDNISLYW LTNTGVSAAR LYKENNLDYF
SPKGVKIPVA VSAFPDELYQ APKKWAEQAY SNLIYYNRPN AGGHFAAWEQ PKLFSEELRA
SFQSLR
|
|---|
| |