| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5664 |
|---|
| Symbol | |
|---|
| ID | 8361844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7224287 |
|---|
| End bp | 7225204 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644967807 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003125288 |
|---|
| Protein GI | 256424635 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.169654 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.914485 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGTG AAACACCGAA GACGCAAGGA TTAGACTCCA TACCGGAAAT ACACCGGGTA
TTAGGCCTTC CGGGACCTAT TCATCCGCTG ATTACCATAT TGGACCTGAC AGACGGCCAA
CTCGATTTAT GCAAGCTGCC CCAGAGTCGT GTGCTGCATT TCTACAAGAT CTCTTTTGTG
ACCAAACTGG GCGGAAAGGT GAAGTATGGT CAGGGCTACT ACGACTTTAA TGAAGGCAGT
TTATTGTTCG CCTCACCTAA CCAGGTCATA GGCGGTATAG AAGCGGATGA AGACATTATG
GGTTATTCAT TGCTCATTCA TCCGGATTTC CTGCAAGGTT ATTCATTGGC CAATAAGATC
AAAAAATATA ATTTCTTTTC TTATTCTTCC AATGAGGCAT TGCATCTGTC AGAGCAGGAG
AGAGCCACTA TGCTCGCCAT TTATACGATC ATTCGTGAAG AACTGAATAG CAGGATCGAT
GACTTCAGTC ATGAAGTAAT CATTGCACAA ATCGAACTGC TGCTGAGTTA TGCAAAGCGT
TTTTACAAAC GTCAGTTCCT GACCCGGCAG TCGGCTACTA GTGATCTGCT GCAACAATTC
GAACAACTGT TGAATAATTA CTTCGAAGAA GAAAAACCGG TCAGCCTCGG TGTGCCCACC
GTTCAATATC TCGCAGATCA GTTGAACTAT ACTGCTAATT ATTTAAGTGA CATGTTACGT
TCACTTACCG GCCTCAATGC GCAACAGCAT ATCCATCAGA ATCTCATAGA GCGGTCAAAA
GAGATGTTGT CTACGACGAA TATGAACGTC AGTGAAGTAG CGTATCTGTT AGGCTTTGAG
CATCCGCAGT CTTTCAGCCG CCTGTTCAAG AGCAAAACAA ATGTCTCTCC TGCGGAATTC
AGGTCGGCGT TTAATTAA
|
|---|
| Protein sequence | MKSETPKTQG LDSIPEIHRV LGLPGPIHPL ITILDLTDGQ LDLCKLPQSR VLHFYKISFV
TKLGGKVKYG QGYYDFNEGS LLFASPNQVI GGIEADEDIM GYSLLIHPDF LQGYSLANKI
KKYNFFSYSS NEALHLSEQE RATMLAIYTI IREELNSRID DFSHEVIIAQ IELLLSYAKR
FYKRQFLTRQ SATSDLLQQF EQLLNNYFEE EKPVSLGVPT VQYLADQLNY TANYLSDMLR
SLTGLNAQQH IHQNLIERSK EMLSTTNMNV SEVAYLLGFE HPQSFSRLFK SKTNVSPAEF
RSAFN
|
|---|
| |