| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5663 |
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| Symbol | |
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| ID | 8361843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 7220238 |
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| End bp | 7223801 |
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| Gene Length | 3564 bp |
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| Protein Length | 1187 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644967806 |
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| Product | Ricin B lectin |
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| Protein accession | YP_003125287 |
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| Protein GI | 256424634 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3408] Glycogen debranching enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.765642 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.474781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTACG CGACAATGAT CATATCATTG CTAATCTGTA TGTTGTCCAC CAATGCCCAG
GTGACACTCT ACAGTGACAT TAATTATGGA GGCGCCGCTG TCTCATTCCC CGTTGGAAAC
TATCGTCTCG CAGATATGAA TGCGGCAGGA TTCCCGGATG ATGCCGTTTC CTCTTTTTCA
ATACCCGCAG GGTATCAGAT TACCTTTTTT GCAGATGATA ATTTTACCGG TAAAAGCTTT
AGTGTTACAA CTTCTTCAAC ATGGATCGGT GCAGAATGGA ATGACCAGGT GACCTCTTTT
ATTGTCAGCA TCATTCCTCC CGGCCAGGGA ACCGCTAACT GGATCTGGAC TCCCAATGCA
GGTCCGGCAA ACACCTGGGT AGCCTTCCGA AAAAAAATTA CACTGTCTTC CAGACCTGCT
ACGGCACTCA CTAAGATTGC TGCGGAGAAT AAGTACTGGC TGTATATGAA TAATCAGCTG
GTGGTAAAAG ATGGAGGACT CTCTTTGCGC CCTGATCTGG TGAATACCTA TTATGATGAA
GTAGATATTG CCCCCTATCT GCAAGCGGGT GAAAATACGA TTGCCATACT GGTGTGGTAT
AAAGGTGGAC AGAATGGTTA TTCAGAGAGG GCTGTCGGCA ATGGCGGTTT ATTATTCGAT
GCTGGTTCCG TGGTAGTGTC AGATGATACC TGGAAGTGCA CTGTTCACCC TTCTTTTGCC
GCTACAACCC AGTTAATTCT GAACGGACAA GATTACAAAT GGATCGCATT CCCGGTTTCC
TACAATGCTG CAAATGAACC TGCCGGCTGG AACAGCGTAG GTTTTAACGA TGCATCCTGG
TCAGCGGCAG TAAAGAAAGG CGTTCCGCCA ATTGGTCCGT GGAATTCGCT CGTACCGCGG
GGTATTCCAT TCTGGAAAGA AGCTGGCTTA AGCAATTATC AGAATACAAT ACCTACATCT
ATTACAGCAA ATACGACCAT CACTGGAACT GTTGGTACCA ACATTCAATT ACGTCCTTAT
TTGCGCGTCA ATGCGCCCGC AGGCGTGAAG GTTAAGATCA TTGTAAACAG GCATTACTGG
CAGGAGTATA TTACCAAAGC CGGTGAGCAG GAATTTGAGT GTCTGGCCTG GCAAAATTCG
AGTAATCATA CCGTCACCTA TGAGTTTACC AATGTAACTG GTACGATACA GATACTGGAT
CTGAAATACC GGGAGACCAG TTACAATGCA GACATCATTG GCCAGTTTAA TTCTTCTGAT
GTAGCGTTGA ACACTTTATG GACAAAATCT AAAAACACCT CGAGGGTATG TATGAGGGAT
CAGTACTATG ATTGTCCCGA CCGCGAACGT GGCCAGTGGT GGGGAGATGT ATCTGAACAG
ATTCTTTACT CATGCTACTT ATACGATACC AGTGTAAATA AACTGACGCG TAAAGCTTTC
CGGGAACTGA TGAGTACACA AAAGGCAAAT GGCTCCCTTT ACACGACAGC ACCAGGTACC
AGCTTTCATC TGCCTGATCA GAACCTTGCG GCAGTGGCTA TGATCTGGAA ATACTATATG
TATAGCGGAG ACAGGGCGTT GTTACAGGAA ATCTATCCAC AGTTAAAGAA ATACATTCAG
TTTTGTGTCA ACTGTTCTAA TGCAGATGGT ATGCTCCTTT TACAAAGTGA TGCATGGAAC
TGGATCGACT GGGGTACTAA TATAGGGGCT TTACCAGTGG GTAGTGCCAA CACTGTATTC
AACGCACTTT ATATTTCCGT TCTGGAGACT GCCATTAATA CGGCAGGTCT TTTAGGTCAG
ACTACTGATG TAACGTATTA TCAGAGTTTG CAGACAAAAG TGAAGAATAA CTTTAATAAT
TATTTCTGGA AAGATGCATT ACGTGCCTAT GTATCCGGTA ATGTGTCTTC CGCTGTAGTA
GACGACAGAA GTAATGCCTG GGCTTTATTG ACCGGTCTAG CCAATGATCA GCAGAAAGCA
GGTGCATTAA GTGTCTTAAG AAGCAGAAAT GATGCAGGTC CTTACCAGGA GATGTATATC
GAAGAAGCAC TTTTCAGGTA TGATCCAACT GCTGCAATTA CACGTATGAA GAATCGTTTT
ACGCCGATGA TTAACAGCTG GTCATCTACC CTGTGGGAAG ATTTTACAGA GGCCAATAGT
AATGCAGGAT ATTCCAGCAA TAATCATGCA TGGTCAGCGG GGCCGTTGTA CGTAATGAGT
GCTTATATGT TGGGCATTCG TCCAACACAG CCCGCTTATG CGGAGTTTAT ATTTGCACCA
CAGCCCGGAG GTGTTACACA GTATTCCGGC CTGATACCAA GTGTTAAAGG GAATATCTCC
GCCAGCTTTT CTCTCGGTAG CAACAGCTTC ACACAAAGCC TGATTGCACC TTCAGGTACG
ACTGCCATCG TTAGTGTGCC AAAGGATATC TTCTCTACGC TTGTTGCTGA GATTCAGGTT
GGTGGTGTTA CTGTATGGAA AAATGGTACT TTTTCAGGTG GTGTGAATGG TGTTACATTC
TTCCGGCAGG ATGACAAATC GGTGCAATTT AAAGTGACAC CAGGAAGCTG GCAATTCACT
GCGCGGCCAT TCACAAGTAC AGACCCGGTG ATCACTTATA TGGATTGCAA TTATAGCGGA
AATGCTGTTA GTCTGCCTGT TGGTAACTAT ACACTGGCAC AGATGCAGGC AAGAGGTATC
ACTGATGACG CTGTTTCTTC ATTGGTAGTA GCGGAAGGTT ATAAGGTAAT ACTATATGCG
GATGATAATT TTACAGGTCA GACGGAAACG CTGACTGCTA ATAATAACTG TATTACCTGG
TCAGCGCTAC ATGATAGAAC GACATCTATA CGGGTATTGA CGAACGGTGT AACCAACCTG
TCGGGTACGT ATTTTATACG TAACAGAGCC AGTGGATTAC AGATGGATGT AAATGGTGCT
TCTACTGCCG ATGGCGCCAG TGTTATTCAT TCTGAATACA ATGGTAACGC TAACCAACAA
TTTGTATTTA CGCATCTTGG TGATGGGAAT TACAAGATCC TTGCAAAACA CAGCGGTAAA
TCGCTGGACG TAAATACCGC TTCTCTTTTG AATGGTACTA ATGTAATTCA ATATCCCTAC
CATGATCCGG TGGAGCCTCA ACAGAACTTT ATCATCGTCG CGACCGATGA TGGATACTAT
AAAATCATTG CCAGACATAG TGGGAAAGTA TTGCAGGTGA ATGGTGTTTC AGGTGGAGGA
CAGGTGCATC AATGGTCAAA TACAGGACAA GTGAATGGAC AGTGGACTTT TACTGCGGGG
ACGGCGTCAG CCAGTACAGA AAATACCTCC GCTCTTGCAT TAGATCCTAA CCCTGTCGCA
AACATGATAA CAGTGAAAGT GACCAGTAAA AAAGAAGAGA AACTTTATAT GCGTATTTAT
AATGCAACTG GTATGCTGGT AAGTCCTGCA CAGAAAATTT ATAGTGGTCA GCAGTTCAAC
TTGTCTGCGC TGCCTGCCGG TGTCTATATT GTAAGTGTTA CTATCGGAAA TAAAGTTGTC
AGTAAGACGA TAGTGAAGCA ATAG
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| Protein sequence | MKYATMIISL LICMLSTNAQ VTLYSDINYG GAAVSFPVGN YRLADMNAAG FPDDAVSSFS
IPAGYQITFF ADDNFTGKSF SVTTSSTWIG AEWNDQVTSF IVSIIPPGQG TANWIWTPNA
GPANTWVAFR KKITLSSRPA TALTKIAAEN KYWLYMNNQL VVKDGGLSLR PDLVNTYYDE
VDIAPYLQAG ENTIAILVWY KGGQNGYSER AVGNGGLLFD AGSVVVSDDT WKCTVHPSFA
ATTQLILNGQ DYKWIAFPVS YNAANEPAGW NSVGFNDASW SAAVKKGVPP IGPWNSLVPR
GIPFWKEAGL SNYQNTIPTS ITANTTITGT VGTNIQLRPY LRVNAPAGVK VKIIVNRHYW
QEYITKAGEQ EFECLAWQNS SNHTVTYEFT NVTGTIQILD LKYRETSYNA DIIGQFNSSD
VALNTLWTKS KNTSRVCMRD QYYDCPDRER GQWWGDVSEQ ILYSCYLYDT SVNKLTRKAF
RELMSTQKAN GSLYTTAPGT SFHLPDQNLA AVAMIWKYYM YSGDRALLQE IYPQLKKYIQ
FCVNCSNADG MLLLQSDAWN WIDWGTNIGA LPVGSANTVF NALYISVLET AINTAGLLGQ
TTDVTYYQSL QTKVKNNFNN YFWKDALRAY VSGNVSSAVV DDRSNAWALL TGLANDQQKA
GALSVLRSRN DAGPYQEMYI EEALFRYDPT AAITRMKNRF TPMINSWSST LWEDFTEANS
NAGYSSNNHA WSAGPLYVMS AYMLGIRPTQ PAYAEFIFAP QPGGVTQYSG LIPSVKGNIS
ASFSLGSNSF TQSLIAPSGT TAIVSVPKDI FSTLVAEIQV GGVTVWKNGT FSGGVNGVTF
FRQDDKSVQF KVTPGSWQFT ARPFTSTDPV ITYMDCNYSG NAVSLPVGNY TLAQMQARGI
TDDAVSSLVV AEGYKVILYA DDNFTGQTET LTANNNCITW SALHDRTTSI RVLTNGVTNL
SGTYFIRNRA SGLQMDVNGA STADGASVIH SEYNGNANQQ FVFTHLGDGN YKILAKHSGK
SLDVNTASLL NGTNVIQYPY HDPVEPQQNF IIVATDDGYY KIIARHSGKV LQVNGVSGGG
QVHQWSNTGQ VNGQWTFTAG TASASTENTS ALALDPNPVA NMITVKVTSK KEEKLYMRIY
NATGMLVSPA QKIYSGQQFN LSALPAGVYI VSVTIGNKVV SKTIVKQ
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