Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5648 |
Symbol | |
ID | 8361825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 7204082 |
End bp | 7207207 |
Gene Length | 3126 bp |
Protein Length | 1041 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644967789 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003125273 |
Protein GI | 256424620 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATGTAA AAAATGCTTC TAAGAGGCTA TGGATGCTCC TGTCCTTCAT AGCTATGCTG ACCGGCGCCA TGCCTGCCTT TGCCCAGAGT GGCAAAATCT CCGGGACCGT CACGGACATT CAAGGACAAG CGCTTCCCGG TGTATCGGTG AAGCTGACCG GCACCAAAAC CGGTACTGTC ACGGACCTGA ATGGTGCTTT CTCGCTGAAT GCTACTGAAA AAGGTACGCT GGAATTCAGT TTCCTGGGAT TTGAAATACA AACGGTCGTT TTTTCCGGCT CGCAGCCGAT CAAAGTCAAA CTACAACAGG CGACAGCCAA TGTGGATGAA GTGGTCGTAG TGGGCGCCAG CATGAAAAAG TCTGATCTGA CTGGTTCAGT GGCTACAGTA GATTCAAAGA AACTGCTGGA GCGTCCTGCT ACCAACATCA ACCAGGCGTT ACAGGGTAAT GCTGCCGGCG TATTCGTAAG TAATGGTACC CGTCCTAGCG ACGATGCTAC CATCCGGGTA CGTGGTATCA ATACGATCAA CGCTGGTTCT TCTCCTATCT ACGTTGTGGA TGGTGTCATC ATGGAAAACA ACCAGGGTGG CTTTAACTCC GTAAACGTGA ATGACGTTGC TTCCGTACAG GTACTGAAAG ACGCTTCTGC TACCGCATTA TACGGTTCCC GTGGTGCAAA CGGCGTTGTG GTGATCACCA CCAAGAAAGG TCAGCGCAGA GGTGGAGACG GTCTTGTGAC CTACGATGCC TGGGCTGGCG TGTCTGACTT TACCCGCATT CCTAAAACGA TGAATGCACA GCAGCTGTTC GATCTGCGTA TCGACGCTTA TGCGAATGGT TATATGAAGG ATAATCCGAA CGCTAATCGC CAGGATTATA TCGATAATAC CCTGATGAAG ACAAACATCG CTTTCTCTAA TCAGGAGTTC GATACGCATA ACAAAAACCA AAGCTTTAAC TGGCTCGACC AGGTAACCCG TACGGGCTTT CAGCAGAACC ATGCTTTGAG CTTCTCTGGT GGATCTGACC GTGGTATCTT CTATCTCAGC CTTGGTTACG CAGGTGTTAA AGGTGTGGTA GAAAATACTG ACCAGAAAAA ATATACCGGC CGTTTCAATG CCGAATACAA TATCAAGAAA TGGTTAAAAG TAGGTACCAA CACCGGCTTT ACCCGTCTAA ATGATGGTAT GCCATCTGAT GATGTATATG GTAAAGCACT GAACGGTAAC CCGCTGCTGG ACTATGCGCC TTACCGCGAT CCGGCTACCC GTTTTACTTA CGACTACCTC ACACTTTATT ACCGTTCACA TGGTGAGCAG AACAACAACG ATTTCAACCC GTTCAACTCT CTGTTAATGC AGCGCGATCG TACGCGTAGC CGTGTAACTA CTGCTAACTA TGTAGACATC TCTCCTATAA AAGGTCTGAA CTTCCGTTCC AGCTATTCCC TGGATTACGG TGCACAGGAC TGGTTTGAAT TCACACCACA TAACATCCAG GAAGCGATCC GTCACTACAA TGGTGATGCG CGCGCTAAAC ATGAAAGATG GAGCGATACT TACTGGCAGT GGGATAACAC CCTGACATAT AATACCATGT TGGGAACTGA CCATAAACTG ACAGCGTTGG TGGGTACCAG CTCCAGCAAA CGTTCTTCTA ACTATTCCAA AGCACAGGGC GACCGTTTTG CAAGTGATGA TCTGGGTTAT TATGACCTGG GTGGCGCTGC TGCACTGGAA AAAGCAGTAC TCGGTTCTGA CTTCTATGCT TACAGTCTGA TGTCTTTCAT CGGTCGCGTA AACTATAGCT ATAAAGATAA ATATCACCTG ACGGCTACTG CCCGTTATGA TGGTTCTTCC CGTTTCGCTG CAGGCAACCG CTGGGGTATC TTCCCGTCTA TGTCCGCTGC ATGGGATATC ATCAAGGAAG ATTTCATGAA AGACGTGCCG GTATTCACAC AGTTGAAACT GCGTGCAGGT TATGGTGTGG TTGGTAACCA GGATATCGGT AACTACGCCT TCCAGACACT GTACGGTTCC AAGATCGATA ACGGTAATGC ACTGATTGCA AATGATGGTC GTCGTGGTAA TCCGAATATT ACCTGGGAAA AACAGAAACA GACCAACCTG GGGCTGGATA TGGGCTTCCT GAAATCAAGA TTGACTGTCA CTGCCGACTT CTTCTACATC AATAACGACA ACCTGTTACT GGACCGTTCC CTGGCATTTA CTACTGGTTA TAGCAAACAG TGGGAAAACG TAGGACGTGT AAATAACAAG GGTATGGAGT TCGCTGTAAA TGGTGAAGTG ATCCAGACGA AAAACTTCAA CTGGAACGTA TCGGCTAACA TCTCTTTCGA CAAGAACAAA GTGACCCGTC TGTATGGTAA TGCTACAGAG ATCTATAATC TCTATGAAAA CTCCATCCAA CGTGAAGGCA ACATCTTCCT GGGTCAGTCT ATCCATAGCA TCTACACCCT GAAATCTGGT GGTATTGCAC AGGAATCTAA CCGTCGTGAC TGGGAAAATA TCAATTACAA TGGTAAGACG GTTAATCCGG GCGACCTCTT TGCAAAAGAC ATCTCTGGTC CTAACGGTGT ACCTGATGGT ATAGTAGACC TGACCTATGA CAGAACCGTC GTAGCGAAAA CAGATCCTAA ATTTTATGGT GGTTTCTCTA CCAACCTCGG TTACAAAGCA TTCTCCGTGA GCGCAATGTT CACTTACTCT TACGGCGCTA AAAAGATCAG CAGTTACTAT GAAGGTCTGG CGAACAGTAT CGGTGAGAGC ATGGCATCTG TAGACCTGCT GAACCGCTGG ACGCCAACGA ATACCAATAC AACTGTTCCA CGTGTGATCG GCAATACCAG CTACAACCGT TTTAATCCGT CCGATCTGGA CTACGCTGTC CAGAACGCTT CATTCCTGCG TCTGTCTGCA CTCACGCTGT CTTACACACT GCCTGAGAAA ATGCTGAGCA GCTGGAAAAT GAACAACCTG CGTCTGTATG CAACTGGTTC TAACCTGTTC TGTATCACAA AGTACAAGGG TATGGATCCG GAAACCGGCG ACTACGGTTA CCCTCCGGTG AAAATGTATG TATTAGGATT GAATGTAGGT TTCTAA
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Protein sequence | MHVKNASKRL WMLLSFIAML TGAMPAFAQS GKISGTVTDI QGQALPGVSV KLTGTKTGTV TDLNGAFSLN ATEKGTLEFS FLGFEIQTVV FSGSQPIKVK LQQATANVDE VVVVGASMKK SDLTGSVATV DSKKLLERPA TNINQALQGN AAGVFVSNGT RPSDDATIRV RGINTINAGS SPIYVVDGVI MENNQGGFNS VNVNDVASVQ VLKDASATAL YGSRGANGVV VITTKKGQRR GGDGLVTYDA WAGVSDFTRI PKTMNAQQLF DLRIDAYANG YMKDNPNANR QDYIDNTLMK TNIAFSNQEF DTHNKNQSFN WLDQVTRTGF QQNHALSFSG GSDRGIFYLS LGYAGVKGVV ENTDQKKYTG RFNAEYNIKK WLKVGTNTGF TRLNDGMPSD DVYGKALNGN PLLDYAPYRD PATRFTYDYL TLYYRSHGEQ NNNDFNPFNS LLMQRDRTRS RVTTANYVDI SPIKGLNFRS SYSLDYGAQD WFEFTPHNIQ EAIRHYNGDA RAKHERWSDT YWQWDNTLTY NTMLGTDHKL TALVGTSSSK RSSNYSKAQG DRFASDDLGY YDLGGAAALE KAVLGSDFYA YSLMSFIGRV NYSYKDKYHL TATARYDGSS RFAAGNRWGI FPSMSAAWDI IKEDFMKDVP VFTQLKLRAG YGVVGNQDIG NYAFQTLYGS KIDNGNALIA NDGRRGNPNI TWEKQKQTNL GLDMGFLKSR LTVTADFFYI NNDNLLLDRS LAFTTGYSKQ WENVGRVNNK GMEFAVNGEV IQTKNFNWNV SANISFDKNK VTRLYGNATE IYNLYENSIQ REGNIFLGQS IHSIYTLKSG GIAQESNRRD WENINYNGKT VNPGDLFAKD ISGPNGVPDG IVDLTYDRTV VAKTDPKFYG GFSTNLGYKA FSVSAMFTYS YGAKKISSYY EGLANSIGES MASVDLLNRW TPTNTNTTVP RVIGNTSYNR FNPSDLDYAV QNASFLRLSA LTLSYTLPEK MLSSWKMNNL RLYATGSNLF CITKYKGMDP ETGDYGYPPV KMYVLGLNVG F
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