| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5642 |
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| Symbol | |
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| ID | 8361819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 7193894 |
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| End bp | 7195516 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644967783 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_003125267 |
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| Protein GI | 256424614 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR02456] trehalose synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000211534 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.444192 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGACG ATCTCTGGTA CAAAAACTCA GTTATTTATA GCCTTGATCT TGAAACTTTC
ATGGATGGGA ATAATGACGG CACGGGCGAT TTTGCCGGTC TTTGTGATCG TCTGGACTAT
TTACACGCTA TGGGAGTCGA TACTGTATGG CTGGCGCCCT TTCAGCCTAC TCCGAATAAA
GATAATGGTT ATGACATTCA GGATTATTAC GGTGTAGATC CCCGGCATGG TTCCAGTGGC
GATTTTGTGG ATTTTATGCA CAGAGCTGAC AAGTTAGGCA TCAAAGTGAT CATTGACCTG
GTTGTCAATC ATACTTCAGA TAAACACCCC TGGTTTGTGA TGGCCCGATC ATCAAAGGAT
AATCCTAAAC GTGACTGGTA TGTATGGTCA GATAAGAAGC CATCTGACTG GGACGAAGGA
ATGGTTTTCC CTGGTGTTCA GAAGTCTACA TGGACACTGG ATAAGGAGAG CCGTACTTAT
TATTTTCATC GGTTTCATGA GTTTGAACCG GACCTTAATA CAGATAATCC TGCTGTAAGG
GAGGAGATCA CCCGTATTAT GGGATACTGG TTACAGCTTG GAGTAGCTGG TTTCCGTGTT
GACGCTGTTC CATTTATCCT GGAATCGCCG GCGCCAGGCG GGAAGAAGCC TAAAATGAAC
TTTGATTATC TGAAAGAAAT GCGTCGTTTT CTTCAATGGA GAAAAGGGGA TGCCGTACTG
TTGGGAGAGG CGAATGTGCT TCCTAAAGAC AGTATGAAAT ACTTTGGTGA AAACAGTGAT
GGTATACACC TGATGTTCAA CTTTTTTGTC AATCAGTACC TGTTTTACGC ATTGGCCACC
TGTAAAACGA CGCCGCTGAT CAAGGCGTTG GAGCAGACAA GGTTGACATC ATCTACACCA
CAGTGGGCAC ATTTTCTGCG TAACCATGAC GAACTGGACC TGGGGAGACT GTCTGAAAAG
GAAAGGAATG AAGTTTTCCA GCGCTTTGCA CCTGAAGAGG ATATGCAATT ATATTTCAGA
GGTATCCGCC GTAGACTGGG TCCTATGTTG GGTAGCAGGC AGCAGAACGA ACTGGCTTAC
AGTGTCATGT TTTCCTTACC CGGCACACCG GTACTCCGCT ATGGAGATGA AATAGGAATG
GGTGATAATC TGGCATTGGA TGACCGGAAC AGCGTCAGAA CACCGATGCA ATGGTCGGCG
GAGTACCAGG CGGGTTTTTC AAAGGCAGAT AAATTACTGC ATCCGGTGAT TGACGACGGT
TATTATTCAT ACGTGCATAT TAATGTGGAA GCGCAGCGCA GAGACGCAGG CTCTATGTTG
AACTGGATGA CGTCAATGAT AAGATTAAGG AGGGAGTGTC CGGAGATTGG GAACGGAGAA
TGGCAGATCA TAGAAACGGG TTATGACCAT ATATTAGGGA TGTATTATAA ATGGAAAAAC
CGCCGCTTGT TTATCTGGCA TAATTTCAGC GAAAAGCCAC AGGAACTGGT GTTTATGGCA
AAGGAGGCAG GTACCCGCAG ATTGGTTGAT CTGATGGACA ATATTGAAAG TATAGAAGAT
GAAAAAGGCC GGCATACCAT TACCCTGGAA GCTTATGGCT ATCGTTGGTT CAGGGCTGGC
TGA
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| Protein sequence | MMDDLWYKNS VIYSLDLETF MDGNNDGTGD FAGLCDRLDY LHAMGVDTVW LAPFQPTPNK
DNGYDIQDYY GVDPRHGSSG DFVDFMHRAD KLGIKVIIDL VVNHTSDKHP WFVMARSSKD
NPKRDWYVWS DKKPSDWDEG MVFPGVQKST WTLDKESRTY YFHRFHEFEP DLNTDNPAVR
EEITRIMGYW LQLGVAGFRV DAVPFILESP APGGKKPKMN FDYLKEMRRF LQWRKGDAVL
LGEANVLPKD SMKYFGENSD GIHLMFNFFV NQYLFYALAT CKTTPLIKAL EQTRLTSSTP
QWAHFLRNHD ELDLGRLSEK ERNEVFQRFA PEEDMQLYFR GIRRRLGPML GSRQQNELAY
SVMFSLPGTP VLRYGDEIGM GDNLALDDRN SVRTPMQWSA EYQAGFSKAD KLLHPVIDDG
YYSYVHINVE AQRRDAGSML NWMTSMIRLR RECPEIGNGE WQIIETGYDH ILGMYYKWKN
RRLFIWHNFS EKPQELVFMA KEAGTRRLVD LMDNIESIED EKGRHTITLE AYGYRWFRAG
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