| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5599 |
|---|
| Symbol | |
|---|
| ID | 8361776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7148124 |
|---|
| End bp | 7150724 |
|---|
| Gene Length | 2601 bp |
|---|
| Protein Length | 866 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644967742 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003125226 |
|---|
| Protein GI | 256424573 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000158529 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGAA TTCTCTGGCT ATTTGCCATG TTGACCTTCT CCTTTTATGT ATCCGCGCAG
CAGCGCCCTG GAGGCGGAGC CGGCCCGGGT GGATTTGCCG GCGCCAAACC ACCGAGTATA
GGACGTATCT ATGGAAAAGT CCTCGACAAT GAAGGGAAGC CAATGCCTTA TACCTCTGTG
ATCGTGTTCC AGAACAAACT TGATTCCGCT ACCAATACCA GAAAAGATAT CCTCCTGAAA
GGTGTTATCA CGCAGAACAA TGGTGAATTC AACCTGGAAG ATCTGCCGGT AATGGGGCCA
TTGATCCTGA AAATATCTGC TACCGGTTTC AAACCATACG CACAGACCGT TTCTTTCCTG
ACAAAGAAAC CTGCGCCTGG TACCATGCCT TCCTTTGACA AAGATCTGGG CAATATCAAA
CTGACCAGCG ATATCAGTCA GCTGCAGGGC GTCACCGTTA CCGCCTCCAA ACCACTGATG
AAAGTGGACA TGGATAAGAA AGTATTCAAC GTTGAACAGA ATATTTCCAG CGCCGGTGGT
ACCGCACAGG ACGTCATGAG AAACGTACCT TCCGTAAACA TCGATATCGA CGGTAAGATG
ACCATGCGTA ATGCAGCCCC CCAGTTGCTG ATAGATGGCC GTCCGACTAC CCTCACCCTC
GATCAGATCC CTGCGGACGC GATCGAAAGC GTGGAAGTAA TGACCGCTCC GAGCGCTAAA
TACGATGCTT CAGGTGGTGG CGCAGGTATC GTGAACATCG TGCTGAAAAA GAACCGTAAA
ACCGGTTATA ATGGTAATAT CCGTGCAGGT GTGGACAAAC GTGGCGGTAT CAATGGCGGC
TTGGACTTCA ACGTACGCCA GGGTAAAGTA AATATCACCG CCAGCGGTAT GATCAACCAG
ATGCGCGATC GTACCAACGG TCACACCGAC AGGCTGGATA TCGCAGATGA TCCGAATATT
CATACCCTGC AGGAAAACAC CTCCAAAACA AATGGTGGTT TCATGTTTGG CCGTCTCGGA
ATGGACTATT TCGCTACCAA CCGTACCACT TTATCCGTAT CCGGTCTCAA AGTACACGGT
TCCTTCAAAC CTTCCAGCAT ATTAGATATC AACAGTGATA CCCTCTACTC CGGCACGCCA
ATGACATCTT TCAGCCGCAG AACAACCGAA GGTGAACGTA CCTTCAACGG TACGGGTCTG
GTTTTAGGTT TAAAACACCT CTTCCCGCAC GAAGGGGAAG AGCTGACCAT GGACGCTAAC
TACTTCGGTG GTAAGAGTGA TAACAGCTCC GATTACAGCA CCGACTACTA CAATATCAAA
GGTGGCGCTG TGACCGGCAA CGAACTGGAA AAGATCAACG GTAGCGGTAA GATGCGCAAC
ATCACCGCAC AGACCGACTA TGTAAAACCA CTGGGTACCA AGAGTAAACT GGAAGCCGGT
TTACGTGCGG CCTTCCGCCA TATCGAGAAC AATAACTACA ATTACCTGTT CAACGAGGCG
ACCAGCCAGT ACGACCTTAC TTCCGGCAAT ACCAGCAACT ATAAAAACAA TGAAAGTGTG
TACGCTGCCT ATGCTACCTT CAGCAGCAGC ATCCACAACT TCAGCTATAA ATTAGGACTG
CGTGGAGAAA GTTCAGAGTA TACGGGCGAA CTGGTACAAA CGGGTCAGAA ATTCAGCAAT
AGCTACCCTA TCAGCCTGTT CCCGACTGTC TTCCTGAGCC AGAAACTGAA ACACGAGCAG
GAAGTACAGA TAAGTGCAAC CCGTCGTATC AACCGCCCGA ACTTCTTCCA GCTGATACCA
TTTGCCGATT CTACCGACAA ATTCAATATC ACCAAAGGTA ACCCGGGTCT GGTGCCAGAA
TTCACGCAGT CCCTTGAACT GTCTTACCTG AAAACATTCA AGGGTAACCA CACCTTCCTG
GGTTCGGTGT ACTACAAACA CACCGATAAC ACCATCACAA GTTTTATCGA CCGTCAGACG
GATCCGATTA CCGGCAACAC AGCACTGATC AATACGTACA TTAACGCCAG CAGCAGTTAT
ACAACAGGTG CAGAGATTAC GGTACAGAAC TATTTCACAA AATGGTGGGA TATGTCAACC
AACATCAACC TGTATAATTC CAAGATCAAC GCCAACGCAG GCGCTCAGCA GGACGCCCTG
TGGAGCATGT TCGGAAAGAT CAACAGTAAT TTCAAACTGC CAAAAGCATT TGATCTGCAG
CTGACCGGTA CCTATCAGTC CAAAACCAAT CTGCCGATCA ATACCAACAC CGGCTTTGGC
GGCGGCCCTC CAGGTTTGGA AGCACAGAGC GCTTCTCAGG GTTACATCCG CTCTTTCTAT
GGTATAGACA TCGCCCTGAA GAAAAGTTTC CTGAAAACAA AGGCACTGAC GGCTACCCTG
GGTGTCAGCG ATATCTTCCG CTCACGTAAA ACCAGTCAGT ACTCTTACAG CGACTACTTC
ATACAGAACT ACGAACGTCT GAGAAACCCA CAGATGATCA GACTGAACAT CGCCTACCGC
TTTGGTAAAG TAGATGCCTC CCTGTTCAAA CGTAAGAGCT CAGGAGCCGG TAACCAGGGT
ATGATGGACG GCATGCAATA A
|
|---|
| Protein sequence | MQRILWLFAM LTFSFYVSAQ QRPGGGAGPG GFAGAKPPSI GRIYGKVLDN EGKPMPYTSV
IVFQNKLDSA TNTRKDILLK GVITQNNGEF NLEDLPVMGP LILKISATGF KPYAQTVSFL
TKKPAPGTMP SFDKDLGNIK LTSDISQLQG VTVTASKPLM KVDMDKKVFN VEQNISSAGG
TAQDVMRNVP SVNIDIDGKM TMRNAAPQLL IDGRPTTLTL DQIPADAIES VEVMTAPSAK
YDASGGGAGI VNIVLKKNRK TGYNGNIRAG VDKRGGINGG LDFNVRQGKV NITASGMINQ
MRDRTNGHTD RLDIADDPNI HTLQENTSKT NGGFMFGRLG MDYFATNRTT LSVSGLKVHG
SFKPSSILDI NSDTLYSGTP MTSFSRRTTE GERTFNGTGL VLGLKHLFPH EGEELTMDAN
YFGGKSDNSS DYSTDYYNIK GGAVTGNELE KINGSGKMRN ITAQTDYVKP LGTKSKLEAG
LRAAFRHIEN NNYNYLFNEA TSQYDLTSGN TSNYKNNESV YAAYATFSSS IHNFSYKLGL
RGESSEYTGE LVQTGQKFSN SYPISLFPTV FLSQKLKHEQ EVQISATRRI NRPNFFQLIP
FADSTDKFNI TKGNPGLVPE FTQSLELSYL KTFKGNHTFL GSVYYKHTDN TITSFIDRQT
DPITGNTALI NTYINASSSY TTGAEITVQN YFTKWWDMST NINLYNSKIN ANAGAQQDAL
WSMFGKINSN FKLPKAFDLQ LTGTYQSKTN LPINTNTGFG GGPPGLEAQS ASQGYIRSFY
GIDIALKKSF LKTKALTATL GVSDIFRSRK TSQYSYSDYF IQNYERLRNP QMIRLNIAYR
FGKVDASLFK RKSSGAGNQG MMDGMQ
|
|---|
| |