| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5573 |
|---|
| Symbol | |
|---|
| ID | 8361750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7115245 |
|---|
| End bp | 7118856 |
|---|
| Gene Length | 3612 bp |
|---|
| Protein Length | 1203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967717 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_003125201 |
|---|
| Protein GI | 256424548 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.805596 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.315829 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAGA ATGCTGCCCC CAAAAGTGAG ATGGAAAGGT TAAGAGCGCT CCAGGAGTAC
GGGTTGCTGC AACTCATGCC CCAGCCGTCC CTCGATCAGT TTTGCAGACT GGCCCCCCTT
ATCTGTCAAT TTCCCTTTTC CGCAATCTGT ATTGCCGGAA ATGACCAGCA ACTGATCATT
TCCGCAACCG ATGTACCTGG TATACAGGAA ACGTCTCCTG ACTGGGGCTT TATGCAGCAG
ATCCTGCACA AAGGCTTATT CACCGAAGTA ACTGACACCC TGAACGATCC CCTCACCCGC
GATAACAAAG CGGTCGTGAC AGCACCCCAT ATACGCGCAT TCGCGGGCTT TCCCCTGCGG
GATAAACAAG GCTTTCTGCT GGGGGCATTC ATCGTCCTGC ATACCGAACC TGCCCGGCTG
ACCAGCAACG AACAAACAGC CTTATCCATC CTGGCAGAAA AGATCTCAGA TACTATACAG
ACCAACCGGC GGAGACAGGA AATGCATTAT TTCACCAGAC TGTTTGACCT TTCCGAAGGA
CTGGTATGTA TCACTGATTT CTCCGGCAGA CTATGGCAAT TCAATAAAGC ATTTACCACT
GTACTGGGTT GGCCGGAAGC AGACCTGCAA ACAATGTCCG CACTGGACCT GGTACACCCC
GACGATACCG CCAGTACAGG AAAAGAACTT GCTAAAATGG GAGAAGGAGC ATCAACCATC
TCTTTCACTC ACCGTGTAAG GACGGCAGAA GGCGATTACC GCCTGATACA ATGGGTGGCT
ACGCCCGAAC CACACACCGG GAACATCTTT GCCATGGGCC GGGATATCAC CAGCGAAACA
CTCAAGGAAC AGGCCCTGAT CGAAAGTGAA ACCAATGCCC GTACCTTCTT CGAAAATTCG
CTGGGTATGA TGTGCCGGCA TGACCTGGAC GGTCATATCA CCTACGTCAA TAAGGCCAGT
GCCGACAGCG TCGGATACAG CATCGAGGAA CTGCTGCAAA TGAACCTCTA TCAGCTGATC
CCGCAACAAT ACCATGCTGA TCTCGACCAA TACCTCATCA ATATCAGGAT CAAAGGTAAA
ATAACGGGCC TGATGCATAC ACAGCATAAG AAAGGACATA TCCGTATCTG GCTGTTTAAC
AATGTACTGA TCAATGATGG CAAAGGCAGC GCTTATGTCA TAGGCAATGC CGCAGATATC
ACAGAAAGAC ACGAACTGGA AACAGATCTC AAACGCACAA AGGAACTGCT GGAACGTACC
AACCAGGTAG CCCGCATCGG GGGATGGGAG GTTGATCTTG GCACGCAGCA ATTACACTGG
TCGACCGTCA CCTGTGAGAT CCATGAAGTT CCCGAAGACT TCAACCTCAC ACCAGATAAT
GCCATGTCTT TTTATACCGG CGACAACCGC ATACTACTGG ACGCCGTCGT AGAACAAGCC
ATCACTAACG GCTCCCCCTG GCAGATAGAA TTACAGATCA CTACCTGGCG GGGCAGAAAG
TTATGGGTCA GATCCATCGG ACATGCAGAG TTTGAAGACG GTGTGTGTAA AAGACTGTAC
GGCACCTTCC AGGATATCGA CGAAAAGAAA AAAGCGGACC TCGCTATTCA ACAGTCCCGG
CAACTACTGG AAGATGTCCT GGAATCTGCG TCGGAAGTCA GCATCATCGC GACTGATCAC
GAAGGCATTA TCACCCTCTT TAACAAAGGC GCGGAAAGAT TGCTGGGTTA TAAAGCAGGT
GAAGTCACCG GAAAAGAATC CTGGACCATC CTCCATGCAG AAGAAGAAAT CATGAACCGG
AGCATTGAAT TATCAGCCCT ATCCGGACAG CATATCGAAG GCTTTGAGGT ATTCACGTAT
GTACCCGAAC TGGAAGGCTC TGAACGCCGG GAATGGACTT ATATCCGTAA AGATGGCTCA
CAGATCATCA TATCGATGGT CGTAACACCC ATCAGGGACA ATGCAGTGAT CACCGGTTAT
CTGGGTATTG CCGTGGATAT CACCGAAAGA AAGAAGGCAG AACGCGACCT GAAAGAAGCC
AAAATACAGG CAGAATATGC CAGTAAAGCC AAGTCTGAAT TCCTGGCCAA TATGAGCCAT
GAAATCCGTA CGCCGCTCAA TGGCGTCATC GGCTTTACTG ACCTAGTGCT CAAAACCGCC
CTAAATGAAA CTCAGCAGCA ATATGTAGCC ATCGTCAATC AATCCGCCAA TTCCCTGTTG
AGTATCATCA ATGACATACT CGACTTCTCC AAGATCGAAG CCGGCAAAAT AGAACTGGAT
ATCAGCAAAT GCGATATCTA TGAATTTAGT AGTCAGGCCA GTGATATATT AAGTTTTCAG
GCGCAGCAAA AAGGACTGGA AATGTTGCTG AACGTATCCC CTGAACTACC GCGTTTTATG
TGGGCAGATA TCGTCCGGCT GAAACAGATC TTACTGAACC TTTTAAGCAA CGCGGTTAAA
TTCACCGAAA AAGGAGAAAT CGAGCTGGAA ATAAAACCGA TCGCTTACCC CTCCGTTGGT
ATGACGACCA TCCGTTTTGA AGTGCGGGAT ACTGGTATCG GCATCCGTAA AAACAAGCAG
GAAAAGATAT TCGAAGCCTT CCTCCAGGAA GATATTTCCA CTACTAAAAG ATATGGCGGC
ACCGGACTCG GACTAAGCAT TTCCAACAAA CTCCTGGCCC TGATGGGCAG CAAGCTGCAA
CTGGAAAGCA CCACCGGCAA AGGCAGTACC TTCTTCTTTG ATCTCAATGT CAGAACGGAA
GACGGCCAAC CAATCGAATG GGGGAACATG GATCTTGTCA GGGATGTACT TATCGTAGAT
GATAATATCA ACAACCGTAC GATCCTCAAA ACCATGCTGC AACTCAAAAA CATCCGTTTT
GACGAAGCCG CCAATGGTAT TGAAGCGCTA CAATTCCTGA TGACCAAACA GCATTATGAC
GTCATCCTGA TGGACTACCA TATGCCTGTC ATGGATGGCA TCGAAACCAT CCGTAAAATC
AGGGAGAATT TCAGCGAACT CGATAAAGAT CCCGCCATCA TCCTGTTACA CAGTTCGGCT
GACGACGAAA AGCTGATCAA AGCCTGCGAA GAACTGCATG TAAGTCAACG GCTGCTCAAA
CCCATCAAAA TACAGGAGAT GTTTCATGCC CTGTCTCATT TGTACACGAA AGAAGATATG
GAGAATACAC TACAGGTAAA TAAAGAATCC CGAAAAATAA AAGGTAATAT CAGAATACTC
ATTGCGGAAG ATAACCCTAT CAATATGCTG CTGGCCACCA CAATTATCCG GAAAATCGCG
CCGGCGTCCC AGATCGTAGA AGCAAAAAAT GGCCGGGAAG CGGTGGAAAG CTGTGAACAA
CATTTGCCGG ATATGATCTT TATGGACATC CAGATGCCTA TTGTAAATGG CTATGAAGCG
ACCGGCAGGA TCAGGGAGCT GAGTCCGCAT GTACACATCC CTATTATCGC ACTGACAGCC
GGTAATGTGA AAGGAGAACG CGATAAATGT TTGGCGGCTG GTATGGATGA TTTTGTCACC
AAACCTTTTG TTGAGAGTAA TCTGGTCGCA GTGTTTGAAA AATGGCTTAC AAAACGGTCT
GTAGGAAGAT GA
|
|---|
| Protein sequence | MNENAAPKSE MERLRALQEY GLLQLMPQPS LDQFCRLAPL ICQFPFSAIC IAGNDQQLII
SATDVPGIQE TSPDWGFMQQ ILHKGLFTEV TDTLNDPLTR DNKAVVTAPH IRAFAGFPLR
DKQGFLLGAF IVLHTEPARL TSNEQTALSI LAEKISDTIQ TNRRRQEMHY FTRLFDLSEG
LVCITDFSGR LWQFNKAFTT VLGWPEADLQ TMSALDLVHP DDTASTGKEL AKMGEGASTI
SFTHRVRTAE GDYRLIQWVA TPEPHTGNIF AMGRDITSET LKEQALIESE TNARTFFENS
LGMMCRHDLD GHITYVNKAS ADSVGYSIEE LLQMNLYQLI PQQYHADLDQ YLINIRIKGK
ITGLMHTQHK KGHIRIWLFN NVLINDGKGS AYVIGNAADI TERHELETDL KRTKELLERT
NQVARIGGWE VDLGTQQLHW STVTCEIHEV PEDFNLTPDN AMSFYTGDNR ILLDAVVEQA
ITNGSPWQIE LQITTWRGRK LWVRSIGHAE FEDGVCKRLY GTFQDIDEKK KADLAIQQSR
QLLEDVLESA SEVSIIATDH EGIITLFNKG AERLLGYKAG EVTGKESWTI LHAEEEIMNR
SIELSALSGQ HIEGFEVFTY VPELEGSERR EWTYIRKDGS QIIISMVVTP IRDNAVITGY
LGIAVDITER KKAERDLKEA KIQAEYASKA KSEFLANMSH EIRTPLNGVI GFTDLVLKTA
LNETQQQYVA IVNQSANSLL SIINDILDFS KIEAGKIELD ISKCDIYEFS SQASDILSFQ
AQQKGLEMLL NVSPELPRFM WADIVRLKQI LLNLLSNAVK FTEKGEIELE IKPIAYPSVG
MTTIRFEVRD TGIGIRKNKQ EKIFEAFLQE DISTTKRYGG TGLGLSISNK LLALMGSKLQ
LESTTGKGST FFFDLNVRTE DGQPIEWGNM DLVRDVLIVD DNINNRTILK TMLQLKNIRF
DEAANGIEAL QFLMTKQHYD VILMDYHMPV MDGIETIRKI RENFSELDKD PAIILLHSSA
DDEKLIKACE ELHVSQRLLK PIKIQEMFHA LSHLYTKEDM ENTLQVNKES RKIKGNIRIL
IAEDNPINML LATTIIRKIA PASQIVEAKN GREAVESCEQ HLPDMIFMDI QMPIVNGYEA
TGRIRELSPH VHIPIIALTA GNVKGERDKC LAAGMDDFVT KPFVESNLVA VFEKWLTKRS
VGR
|
|---|
| |