| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5566 |
|---|
| Symbol | |
|---|
| ID | 8361743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7104198 |
|---|
| End bp | 7107809 |
|---|
| Gene Length | 3612 bp |
|---|
| Protein Length | 1203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644967710 |
|---|
| Product | GAF sensor hybrid histidine kinase |
|---|
| Protein accession | YP_003125194 |
|---|
| Protein GI | 256424541 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0247633 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTGA AAGCTACTTT TAAAAGGAAT CTGCTGATTG GATTTGGGGT GTCACTGCTA
CTGCTGGTGG TGAGCTCCGT CGCCTCTTTT TTTAGTATTC GCAATCTCCT GGCCAGTGCC
TACTGGGTGG ATCATACTAA TACGGTGATC CTAAAACTGG AAAATACATT GTCCTTTATG
AAGGATGCGG AAACCGGGCA GCGTGGTTTT CTGCTGACAG GAGACGACCG TTTCCTGGAA
CCCTATAAAG GCGCCTATGA CAGTGTACAG GCCACACTCA ACAACCTGAA AGAACTCACA
CAGGACAATA ACGAGCAACA GGTAGCCGTC GAGCAGTTGC GCCTCCTGGT AGTACGCCGT
CAATCTTTGT TGCGGGAATC CATCCAGGTC CGTAAGGCCG GACAGATAAT CAGCTTCGAT
ACCTTACAGA GCGGACGTAT TATTATGGAT GATGCGCGCA GACTGGTAAG TACTATGGAA
GACAGAGAGA AGAGACTACT GGTCATCCGT ACGGCCAACC TTAACCGTAT TTCCGGCTAT
ACGCCTCTTC TTATCGTGAT AGCCGCATTG TTAGCCCTGC TGATCACTTC CGTCTTTTAT
ATACGTGTCA AACGCGATTT TGATGAACGT TCCCGCCTCC AGGAAGCCCT GGAAGAGAAG
GACCGTGAGA TCACACGACG TATTGATATT ATACGAAGTA TTGCAGAAAA GATCTCTGCA
GGTGATTACA GCATCCGTGT AAGGGATGAA GAAAAAGACG GTCTGGGTAG CCTTTCAGTA
TCATTGAATA AGATGGCGCT ATCCCTGGAA ACCTCCTTCA ACGAACTGGC TGATAAGGAA
TGGCACCAGA CAGGAGTGGC TGGCCTGAAC GACAGGATGG TGGGAGAGAA GAACGTGGAA
ACGCTGACCG GGCATATCGT CGAATTCCTT GCTGAATATA CACACAGCCA GGTAGGTGCA
TTGTATCTCA CTGGTCCGGA TAACAGATTA TACCTGTCTG GCAGCTTTGC GTTGGCCAAC
ACCGCCAACC GCCGGGAAAT TCCTATCGGA CAGGGAATGG TCGGACAATG TGCTATCAGT
GGCAAAACAT TGCTGTTACA GGATATTACC CCTGAAAATA TTACCATCAG TTACGCCAGC
GGCGAGATCC GTCCGCGGAA TATAGTGGCA GTGCCCATCC ATTATGAAGG ATATGTAAGA
GGTGTGATCG AACTGGCTTC ACTGACTGCT TATACCCCTA ATGACCTGGC ATTCCTGGAA
TCAGTGATGC ATAATATCGG ACTGTCGATC AATACTTCAG AGAACCGCCG TCGTGTGCAG
GAATTGCTGG AAGAAACACA GGCACAGTCG GAAGAGTTGC AGGTACAACA CGGAGAACTG
GAAAATATCA ATACCGAACT GGAAGCACAG GCGCAAAAGC TGCAGGCATC CGAAGAAGAA
TTGCGTGTAC AGCAGGAAGA ACTACAACAG GCCAATCAGG AACTGGAAGA ACGTTCCCGT
TTGCTGGAAG ACCGCAACCA GGTGATTGTA GAACGTAACC TGGAAATACA GAAGAAAGCA
GAAGAGCTGG AAATCAGCAC GAAATATAAA TCAGAGTTCC TGGCGAATAT GTCCCATGAA
CTGCGTACCC CGTTGAACTC TATTCTGTTG TTGAGCAGAT TGATGGCGGA GAACAATGAA
AAGAACCTTT CAGATGATCA GATAGAATCC GCGCAGGTAA TCCAGAGTTC CGGTAAGGGC
TTACTGAACC TGATCGACGA GATCCTGGAT CTGTCCAAGA TAGAGGCCGG TAAGATGGAC
CTGGAATATG CGCCGGTACC GGTACATGAG ATCTGTAATG ATATGGAGGC GCTGTTCGGA
CCTATTGCCC GCGAAAAGAA CCTGGCACTG AATGTTCAGG TGATGTCAGA TGCGCCGGCA
TTGATAGAGA CGGACAAGAT GCGTTTGGAG CAGATCCTGA AAAACCTGTT GTCAAATGCG
TTGAAGTTTA CCGCTAAAGG CGCTGTTACC CTCCAGGTGA CGGCGGTTGC GCAGGATCCT
TCCATCGTGA GATTTGCAGT GAGAGATACG GGTATCGGTA TACCGGTTGA GAAACAACAG
GTTATATTCG AAGCCTTTAA ACAGGCCGAT GGTTCTACCC GTCGTAAATA TGGTGGTACA
GGATTAGGAT TGTCCATCAG CCGTGAACTG GCGAAACTGC TGGGCGGAGA GATCCGTTTG
GAAAGTGAGC CTGGACATGG CAGTGAGTTC GTTGTAACGA TTCCGCTTCG TCCACAGGAG
AACAGGGAAC AACCCGTGCA GGAAGCCACA CAGCAACAGG CGGAGGAAGT GTATCATGAA
GCGGTAAGGG CGAAAGAAAA GAGAGACGAT TATATCGCAA CGGAAATACC ACAGGAAATA
CCGGATGACA GGGAGAACCT GAAGGCGGAA GATAAGATCA TCCTGATCGT AGAAGACGAT
ACCAAATACG CAGGTATCCT GCTGGATTTC ACCCGTAAGC GTGGTTATAA AGGAGTTGTG
GCGGTACGTG GAGACTATGG TATTGAGATG GCGCAACGTT ACAGACCGGC GGCTATCCTG
CTGGATATCG TATTGCCGGT ACAGAGTGGC TGGCAGGTAA TGGAAGCGCT CAAATCCAAT
CCGGTGACCC GTCCGATTCC GGTGCATATT ATTTCTTCAC TGGAAGCGAA GAAGGAGAGC
TTGCAGAAAG GCGCGGTAGA TTTCATCAAC AAGCCGATGG CACTGGATAA GATGCCGGAG
ATCTTCCAGC AATTAGAGAA TGCATTGACA AAGAATCCGA AGAAAGTGCT GATCGTGGAG
GAGAATCCGA AACATGCAGA AGCACTGGCT TACTTCCTGG AAAACTTTAA TGTCAGTACG
GAGATCACGG GCAATATCAG CAGCAGCGTT GCGGCTTTAC AGAAGAAGGA CGTCAATTGT
GTGATCCTGG ATATGGGGGT ACCTGACCAA CATGCGTATG AGACCCTGGA AACGGTGAAG
AGCAACCCCG GACTGGAAAA CCTGCCGATT ATCATCTTCA CGGGTAAGAA CCTGTCCCGT
GCGGAAGAAA ACCGTATCCG TCAGTATGCA GATTCAATCG TGATCAAAAC AGCGCATTCC
TATCAGCGTA TGCTGGATGA GGTAGCGTTG TTCCTGCACC TGGTGGAAGA AAAAGCAGGA
CATAACAAGC CGGCAAGAAA ACAACAGGCG CCGCTGAAAG AAGTATTACA AGGCAAAACC
GTGCTGATTG CAGATGACGA CGTGCGTAAT ATCTTCTCCC TGACAAAAGC GCTGGAGCAG
CATAAGATGA CGATCGTTTC TGCGCTGGAT GGAAAAGAGG CAATGCAGCA GCTGGAAAAT
AATCCTAAGA TAGATATCGT ACTGATGGAT ATGATGATGC CGGAAATGGA TGGTTATGAG
ACGATCCGGA CCATCAGGGA CATCCCTAAA TACAGACACC TGCCGATACT GGCGGTGACC
GCTAAAACGA TGCTGGGCGA CCGTGAGAAA TGTATTAAAG CCGGTGCTTC CGACTATATC
TCCAAACCGG TAGATATAGA CCAGCTGGTA TCGTTGTTAC GGGTTTGGTT GTATGATAAT
GCAAGAGGTT GA
|
|---|
| Protein sequence | MKVKATFKRN LLIGFGVSLL LLVVSSVASF FSIRNLLASA YWVDHTNTVI LKLENTLSFM
KDAETGQRGF LLTGDDRFLE PYKGAYDSVQ ATLNNLKELT QDNNEQQVAV EQLRLLVVRR
QSLLRESIQV RKAGQIISFD TLQSGRIIMD DARRLVSTME DREKRLLVIR TANLNRISGY
TPLLIVIAAL LALLITSVFY IRVKRDFDER SRLQEALEEK DREITRRIDI IRSIAEKISA
GDYSIRVRDE EKDGLGSLSV SLNKMALSLE TSFNELADKE WHQTGVAGLN DRMVGEKNVE
TLTGHIVEFL AEYTHSQVGA LYLTGPDNRL YLSGSFALAN TANRREIPIG QGMVGQCAIS
GKTLLLQDIT PENITISYAS GEIRPRNIVA VPIHYEGYVR GVIELASLTA YTPNDLAFLE
SVMHNIGLSI NTSENRRRVQ ELLEETQAQS EELQVQHGEL ENINTELEAQ AQKLQASEEE
LRVQQEELQQ ANQELEERSR LLEDRNQVIV ERNLEIQKKA EELEISTKYK SEFLANMSHE
LRTPLNSILL LSRLMAENNE KNLSDDQIES AQVIQSSGKG LLNLIDEILD LSKIEAGKMD
LEYAPVPVHE ICNDMEALFG PIAREKNLAL NVQVMSDAPA LIETDKMRLE QILKNLLSNA
LKFTAKGAVT LQVTAVAQDP SIVRFAVRDT GIGIPVEKQQ VIFEAFKQAD GSTRRKYGGT
GLGLSISREL AKLLGGEIRL ESEPGHGSEF VVTIPLRPQE NREQPVQEAT QQQAEEVYHE
AVRAKEKRDD YIATEIPQEI PDDRENLKAE DKIILIVEDD TKYAGILLDF TRKRGYKGVV
AVRGDYGIEM AQRYRPAAIL LDIVLPVQSG WQVMEALKSN PVTRPIPVHI ISSLEAKKES
LQKGAVDFIN KPMALDKMPE IFQQLENALT KNPKKVLIVE ENPKHAEALA YFLENFNVST
EITGNISSSV AALQKKDVNC VILDMGVPDQ HAYETLETVK SNPGLENLPI IIFTGKNLSR
AEENRIRQYA DSIVIKTAHS YQRMLDEVAL FLHLVEEKAG HNKPARKQQA PLKEVLQGKT
VLIADDDVRN IFSLTKALEQ HKMTIVSALD GKEAMQQLEN NPKIDIVLMD MMMPEMDGYE
TIRTIRDIPK YRHLPILAVT AKTMLGDREK CIKAGASDYI SKPVDIDQLV SLLRVWLYDN
ARG
|
|---|
| |