| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5561 |
|---|
| Symbol | |
|---|
| ID | 8361738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7097184 |
|---|
| End bp | 7098542 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967705 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003125189 |
|---|
| Protein GI | 256424536 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0500213 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTATC GTGTATTGTA TTTTATCATT TGCTGCTTTT CACTCACAGT TTCCTGTAAG
AAGCTGATAG AGGTGGACTC GCCTTCTGAC GAGATTCCCG CCGAAGACAT ATATAACGAT
GATCGCCTGG CAGATGCTGC GGTGGCAGAT CTTTATTTTC AGTTGTCTGA TTATTTCCCG
AGTAATGTAT TGCCATTGAT TAACGGCATG ACAGCAGATG AACTTTCTCC GCTGAACAGC
TATCAGCAGG TATATGCCAA TAATGCTATT CCACCGGGAG ATGTACAGCT GTTATCCTGC
TGGAGAAGAA TGTACCAGGT GATATATGGC GCCAATGCGA TACTGGAAGG CATCAGCGCC
AGCAAGGGGG TGTCCACTGA AAAGGGCCGG CAACTGAAAG CAGAAGCCAG TTTTTTAAGA
GCATTCTGTT ATTATTACCT GGTGAACTGC TGGGGAGAAG TACCATTAGT GACTACGACT
AACGTCAATG AGACATCACT GGCGGCGAGA ACGCCGGAAG TGGATATCTA CAGACAGATC
ATTGCCGATC TTTCTGCTGC TGCTGCCTTG TTGCCGCCCG CTTATGTAAG CAGTGAAAAG
GTAAGGGCAA ACAGATGGGC TGTCATGGCA TTACTGGCGA GGGTCTATCT GCAACAGGAC
AGATGGGAGG ATGCCCTGGC CTTATCTTCC GCAGTGATTA ATTCCGGTGA GTATACCCCG
CTGATTGCTG TTGACAGCGT CTTTCTGCGG AATAGTCGTC CGGCGATATT ACAGTTGTGG
CGTAATGAAG GATATACTTT TGCCGGACAA ACTTTTCTGC CTTTAACAGT CGTAGGTGGT
TTTTCACTTT ATCCATTCAC GGCAGATTTT ATGCGCACGT TTGAAGCGAA TGATAAGCGA
AGAACCAGCT GGACCAGTCC GTTTTTCTAT GGCGGTGCGC TTTATTATAA CAGTAGTAAA
TACCGTAACC GTACGGCTGC TTTACCCGGA AAAGAGGAAT ATGTGATGCT GCTGCGTATA
GAGGAGCAGT ATCTTATCCG CGCGGAAGCG GCGGCCAGAC TGGATAATAC AGGCAGTGCA
ATTGCAGATC TCAATGTGCT GAGAGCGAGG GCTGGATTGT CTCCTTTGTC CGCAGGCACT
ATGAGAGATT CCTGTCTCAT GTATGTTGAG CGGGAACGAC GCATGGAACT TTTCACGGAA
TGGGGCGACC GCTGGTTTAG TTTAAAACGA ACCGGCAGCA TTGATTCCGT GATGCGCATA
TTAAAGCCTT CCTGGAAAAC GACGGCAGCG CTTTATCCGA TACCACAGGA GGAACGAAAC
AGGAACCCTC ATCTTACACA GAATGACGGG TATCAGTGA
|
|---|
| Protein sequence | MSYRVLYFII CCFSLTVSCK KLIEVDSPSD EIPAEDIYND DRLADAAVAD LYFQLSDYFP
SNVLPLINGM TADELSPLNS YQQVYANNAI PPGDVQLLSC WRRMYQVIYG ANAILEGISA
SKGVSTEKGR QLKAEASFLR AFCYYYLVNC WGEVPLVTTT NVNETSLAAR TPEVDIYRQI
IADLSAAAAL LPPAYVSSEK VRANRWAVMA LLARVYLQQD RWEDALALSS AVINSGEYTP
LIAVDSVFLR NSRPAILQLW RNEGYTFAGQ TFLPLTVVGG FSLYPFTADF MRTFEANDKR
RTSWTSPFFY GGALYYNSSK YRNRTAALPG KEEYVMLLRI EEQYLIRAEA AARLDNTGSA
IADLNVLRAR AGLSPLSAGT MRDSCLMYVE RERRMELFTE WGDRWFSLKR TGSIDSVMRI
LKPSWKTTAA LYPIPQEERN RNPHLTQNDG YQ
|
|---|
| |