Gene Cpin_5520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5520 
Symbol 
ID8361697 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7041721 
End bp7043520 
Gene Length1800 bp 
Protein Length599 aa 
Translation table11 
GC content46% 
IMG OID644967666 
ProductRagB/SusD domain protein 
Protein accessionYP_003125150 
Protein GI256424497 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000150302 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0291709 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGC TAGTATATAC ATTCCTCGTT TTGGCACTCA TGTCCACTTC CTGCTCAAAG 
TACCTGGATC AGGTACCTGA TGATAGGCTT ACTATTGATG AAACTTTCAG GACCTGGGCA
ACCGCAGAGC GTTTTCTGGC GGACGTGTAT CGTCGCGTCC CGGACGAATA CGGTCAGCGT
GATGCAGGTT CTGAAAGCAA CCGCGGGGTA TGGACCGGCG GCTGTGATGA AGCTGAATTT
TTATGGAGCT TTGTAAGGTC CAATGATATC AATATTGGTA ACTGGGATGC GAATTCCGGT
TTTGTAGGTG ACTACTGGCG TAATTTTTAC CGTGGTATCC GTGGCGCCAG TGTGTTCATG
GAGAATGCAG ATAAGATCAC AGACCTTTCA CCCGATCTGA TCAAAAGATA TAAAGCAGAA
GCGAGAGCGT TGAGAGCGAT GTATTATTTC TACCTGATCC GTATTTATGG ACCAGTAGTG
ATACTGGGGG ATCAGGTGCC TTCTGTCGAT ATGAATATCC AGTTACCACG TAATTCTTTT
GATGAGTGTG TTGCTTTTAT TACCAGTGAA CTGGAAAAAG CCGCGACAGA CCTGCCAACT
ATACAGGGTA GAACAGAAGA CTATGGCCGT ATTACCAAAG GTGTGGCGAT GGCTTTCCGT
GCAAATGCAT TGATGTATGC GGCGAGTCCA TTATACAACG GTAATACCGA TCTGGCGGAT
ATGGTTAATA AAGATGGTAA ACACCTGATC AGTCAGACCT ATGATGCCAA TAAGTGGAAG
GTAGCTGCGG ATGCTTATCA GAGTTTCCTG AGCACCTTTG TTCCAGGCAC TTATGAACTG
TACAGGGAAA ATGATGCCAG CGGAAATTAT AGCCCATATC TGTCTTGTCG TAATGTAATC
CTGAAGGACT GGAACAAGGA AGTGATCCTG GCACGACCAG GTAGCTCTAT TGGTCCGAGA
CAATATGAAC TGACGCCTTA TCATGCCGGC TCCGCTTCGC GTGATGTAAA AGGAAGTGGT
GGCCTGGGTG CTACGCAGAA CATGGTGGAT GCCTTTTTTA TGAAGAATGG CAGAAATATT
GATGATCCAC AATCAGGTTA TGTAAAGACC GGCTATTCCC AGTTCCAGAC CCCTTATGAT
ACACATCCGA TTGAGGTGTA TAATCAATGG GTAGACAGGG AGCCGCGTTT TTATGTAAAT
ATAACTTTTG ATGGCAGTAC CTGGCTCAAT ACCTCTTTTG GGGAGATCAC AACACGTTTG
TACAACACGG GAAACTCCGG TAAACAGACA GGTGGAGGAG ACTATTCTCC AACCGGTTAT
ATTGTACGTA AGGCGATGGG TACTGGTAAA TGGGATGTAG ACAATCGTTC TGTTATCCTT
TTACGTCTGG CGGAAATATA TCTGAGTTAT GCAGAGTGTC TTAATGAAGC AGAGCCAGGT
AGCGCAGAAG CACTAAGATA CCTTAACCTG ATCCGTGAGA GAGCAGGCAT ACCACAATAC
GGTTCTGAAT CACTGCCAGC GCCTGCAGGA CAGGATGCAT TGCGTGAAGC GATCCGTAAA
GAGCGCAAGA TAGAGATGGC ATTCGAGAAC AATCGTTTCT TCGATGTACG TCGTTGGAAG
ATCGGGGAGC AAACACAGAA CGGACCGATG TACGGACTGA ATATCGCCAG CGATTTACCG
GATTTCCTGA AGGTAGTGGT GTTTGAAACC CGTGTGTTTA ACAAGCGTCA TTATTTCTTC
CCGATTCCTA CCGATGATGT TAACAATGAT AAACAGTTAG TACAGAATCC AGGCTGGTAA
 
Protein sequence
MKKLVYTFLV LALMSTSCSK YLDQVPDDRL TIDETFRTWA TAERFLADVY RRVPDEYGQR 
DAGSESNRGV WTGGCDEAEF LWSFVRSNDI NIGNWDANSG FVGDYWRNFY RGIRGASVFM
ENADKITDLS PDLIKRYKAE ARALRAMYYF YLIRIYGPVV ILGDQVPSVD MNIQLPRNSF
DECVAFITSE LEKAATDLPT IQGRTEDYGR ITKGVAMAFR ANALMYAASP LYNGNTDLAD
MVNKDGKHLI SQTYDANKWK VAADAYQSFL STFVPGTYEL YRENDASGNY SPYLSCRNVI
LKDWNKEVIL ARPGSSIGPR QYELTPYHAG SASRDVKGSG GLGATQNMVD AFFMKNGRNI
DDPQSGYVKT GYSQFQTPYD THPIEVYNQW VDREPRFYVN ITFDGSTWLN TSFGEITTRL
YNTGNSGKQT GGGDYSPTGY IVRKAMGTGK WDVDNRSVIL LRLAEIYLSY AECLNEAEPG
SAEALRYLNL IRERAGIPQY GSESLPAPAG QDALREAIRK ERKIEMAFEN NRFFDVRRWK
IGEQTQNGPM YGLNIASDLP DFLKVVVFET RVFNKRHYFF PIPTDDVNND KQLVQNPGW