| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5514 |
|---|
| Symbol | |
|---|
| ID | 8361691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7035556 |
|---|
| End bp | 7036560 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644967660 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003125144 |
|---|
| Protein GI | 256424491 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.75242 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0584888 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCCGA AACATAAAAA ACTGATCGTC ATTGTACCTA TGCCTGGTAC TTATATGCTG
GACATTGCAG GACCGCTGGA CGTCTTCGCA GCTGCCGACA GAATGCTCTG CGAAACCGCG
GGGAAAGACG ATGTCGGATA CGAAATCGTC ACAGCGTCTC CACTCAGTAC AAAGAAGATC
ACCACAAAGA GTGGCGTAGA GATTACCTGT CCGACGAAAG TGGATGAATT AGACCGTCCG
ATAGACACAC TGATTGTAGC CGGTTTTTCT ATCAGGAACC AGGAGACAGG CAAACGTTTC
TGTCAGTGGT TAAAGAATGC CTATCCCGGA ATGCGCCGGA TTGGATCTGT ATGCGTGGGA
ACTTATGCGC TGGCAGAGGC AGGTATACTG CACGGTAAAC AGGCGACTAC GCACTGGGAA
TTCAGCCAGG ACTTCCAGCG CCGTTATCCG GATATCAAGG TGGATACAAA CCCTTTCTAT
ACGAGAGACG GGAATGTGTA TACTTCCGGC GGGGTAGCGT CAGGTATTGA TCTGGCGCTG
GCATTGGTGG AGGAAGACTA TGGAAGGGAT GTGGCCCTTG CGGCAGCACG CAAGCTGGTA
TTGTTCCTGA AACGCACGGG GTATCAATCA CAGTTCAGTA CCCTGTTGCA GGTGCATTCC
ATGGAGAACT CCATTGCCGG TAAACTTCAA CCCTGGATGA TGCAGCATTT ACAGGATGAC
CTGAGCGTCG AAGAACTGGC AGTACATAGC AATATGAGTC TGCGCAACTT CAACCGGATC
TTCCAGAAGG AGACGGGAAT GACGCCAGGG AAATTCGTAG AAAAACTGCG GATTGAAATG
GCGAGGAAAT ACCTGGAGGA CAGTGACCTG AGTATGGAGC AGATTGCGGA AAAATGCGGA
CTGGGAGGAA TCGTATCTAT GCGGCGCACC TTTATGCGGC ATATGATGGT ATCGCCCAGC
GATTACCGCA GAACATTCAG AACATCATTA CAAACCGTTC ATTGA
|
|---|
| Protein sequence | MSPKHKKLIV IVPMPGTYML DIAGPLDVFA AADRMLCETA GKDDVGYEIV TASPLSTKKI
TTKSGVEITC PTKVDELDRP IDTLIVAGFS IRNQETGKRF CQWLKNAYPG MRRIGSVCVG
TYALAEAGIL HGKQATTHWE FSQDFQRRYP DIKVDTNPFY TRDGNVYTSG GVASGIDLAL
ALVEEDYGRD VALAAARKLV LFLKRTGYQS QFSTLLQVHS MENSIAGKLQ PWMMQHLQDD
LSVEELAVHS NMSLRNFNRI FQKETGMTPG KFVEKLRIEM ARKYLEDSDL SMEQIAEKCG
LGGIVSMRRT FMRHMMVSPS DYRRTFRTSL QTVH
|
|---|
| |