| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5511 |
|---|
| Symbol | |
|---|
| ID | 8361688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7031812 |
|---|
| End bp | 7033422 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967657 |
|---|
| Product | glycoside hydrolase family 43 |
|---|
| Protein accession | YP_003125141 |
|---|
| Protein GI | 256424488 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0274092 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGAAA AGCTGCTGTT TATTTTGGCC GGTTTGTGCC TCCCAACGCT GTTTTATGGT
CAGCAGCGCT CCCTTTCCTG GGTAGCTGAT CTCGGAAATG GATCCTATAA AAATCCTGTA
TTAAATGCCG ATTATTCTGA TCCGGATGTT TGTCGGGCGG GTAATGAGTT TTATATGACG
GCTTCCAGTT TTAATGCAGC CCCGGGATTG CCCATTTTGC AGTCGAAAGA CCTGGTTAAC
TGGCAACTGG TGGGACATGC ACTGTTACGG CAGCCTCCTT TTGCGCATTT CAGCAAGGTA
CAACATGGCA ATGGTGTATG GGCGCCTTCC ATTCGTTATC ATAAAGGAGA ATTTTATATC
TATTACCCTG ATCCTGATTT CGGTATATAC ATGATCAGGG CGAAAAATGC AGCAGGTCCC
TGGTCTGATC CTGTAATGGT AAAAGCTGGT AAAGGACTGA TAGATCCTTG TCCGCTGTGG
GATGATGACG GCAAAGCCTA TCTCATACAT GCCTGGGCGG GTAGCCGCGC CGGTATCAAG
AGTATCCTGA CACTCAATCG TATGAATGAA ACGGGTACGG CTGTCACAGA TGAAGGTGTA
CTGGTTTTCG ACGGACATGG TGCACACCCC ACCCTGGAAG GTCCCAAATT GTATAAACGC
AATGGTTACT ATTACATTTT TGCACCAGCC GGAGGTGTGA GTACGGGTTG GCAACTGGTA
TTGCGCTCCC GGAACATTTA TGGTCCATAT GAAGAGAAAA TAGTGATGGA TCAGGGAAGG
AGTGTTGTGA ATGGTCCGCA TCAGGGAGCC TGGGTAGATA TGCCTTCCGG TAGTAGCTGG
TTCCTGCATT TTCAGGATAA AGGCGCTTAT GGTCGTGTGG TGCATTTGCA AACTATGCAA
TGGGTGAAAG ACTGGCCGGT GATAGGTATG GATGCAGATG GTGATGGGAA AGGAGAGCCG
GTCATGACTT ACCGTAAACC ACTGGCGGGT ATGCCCGTGA TGACACCGCC TGAGTCAGAC
GAATTCAACA GTGCGACATT GGGATTGCAA TGGCAATGGC AGGCTAACCC GGTATCTACC
TGGATGATGA TGTATCCGGC GAAAGGCGTA TTGCGATTGT TTTCTGCGAA AATGCCTGAT
TCTTCGCGTA ACTACTGGCA GGCGCCGAAC CTGTTGTTAC AGAAATTTCC GGCAGATAGC
TTTACTGTGA CTGCTAAATG CACATTTACA CCGAATCCTG CGCTGGAAGG AGAGCGGACC
GGCTTGATTA TTATGGGTGT TGATTATGCG GGTATCTCAT TGATGAAGAA AGATAATCAA
CTGCAACTCT TATATGCGTC CTGTCTGAAA GCGGATAAAG GTGCGGCAGA AGAACAGGAA
GTCCTGAAGA CTATTGATGG TAATACCTGT TGGTTTCGGG TGAAAGTAGA TAAAGGAGCG
GTGTGTCAGT TTAGCTATAG TACCGACGGT ACGAAGTTTG TTGATGCGGG GAAACCGTTT
ACAGCGCAGC CTGGAAGATG GGTAGGAGCC AAGGTAGGGA TCTTTTGTAT GCGTAATACA
CAGATCAATG ACAGCGGGTT TGCGGACTAT GATTGGTTCA GGGTAGATTA A
|
|---|
| Protein sequence | MKEKLLFILA GLCLPTLFYG QQRSLSWVAD LGNGSYKNPV LNADYSDPDV CRAGNEFYMT
ASSFNAAPGL PILQSKDLVN WQLVGHALLR QPPFAHFSKV QHGNGVWAPS IRYHKGEFYI
YYPDPDFGIY MIRAKNAAGP WSDPVMVKAG KGLIDPCPLW DDDGKAYLIH AWAGSRAGIK
SILTLNRMNE TGTAVTDEGV LVFDGHGAHP TLEGPKLYKR NGYYYIFAPA GGVSTGWQLV
LRSRNIYGPY EEKIVMDQGR SVVNGPHQGA WVDMPSGSSW FLHFQDKGAY GRVVHLQTMQ
WVKDWPVIGM DADGDGKGEP VMTYRKPLAG MPVMTPPESD EFNSATLGLQ WQWQANPVST
WMMMYPAKGV LRLFSAKMPD SSRNYWQAPN LLLQKFPADS FTVTAKCTFT PNPALEGERT
GLIIMGVDYA GISLMKKDNQ LQLLYASCLK ADKGAAEEQE VLKTIDGNTC WFRVKVDKGA
VCQFSYSTDG TKFVDAGKPF TAQPGRWVGA KVGIFCMRNT QINDSGFADY DWFRVD
|
|---|
| |