Gene Cpin_5511 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5511 
Symbol 
ID8361688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7031812 
End bp7033422 
Gene Length1611 bp 
Protein Length536 aa 
Translation table11 
GC content48% 
IMG OID644967657 
Productglycoside hydrolase family 43 
Protein accessionYP_003125141 
Protein GI256424488 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3507] Beta-xylosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0274092 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGAAA AGCTGCTGTT TATTTTGGCC GGTTTGTGCC TCCCAACGCT GTTTTATGGT 
CAGCAGCGCT CCCTTTCCTG GGTAGCTGAT CTCGGAAATG GATCCTATAA AAATCCTGTA
TTAAATGCCG ATTATTCTGA TCCGGATGTT TGTCGGGCGG GTAATGAGTT TTATATGACG
GCTTCCAGTT TTAATGCAGC CCCGGGATTG CCCATTTTGC AGTCGAAAGA CCTGGTTAAC
TGGCAACTGG TGGGACATGC ACTGTTACGG CAGCCTCCTT TTGCGCATTT CAGCAAGGTA
CAACATGGCA ATGGTGTATG GGCGCCTTCC ATTCGTTATC ATAAAGGAGA ATTTTATATC
TATTACCCTG ATCCTGATTT CGGTATATAC ATGATCAGGG CGAAAAATGC AGCAGGTCCC
TGGTCTGATC CTGTAATGGT AAAAGCTGGT AAAGGACTGA TAGATCCTTG TCCGCTGTGG
GATGATGACG GCAAAGCCTA TCTCATACAT GCCTGGGCGG GTAGCCGCGC CGGTATCAAG
AGTATCCTGA CACTCAATCG TATGAATGAA ACGGGTACGG CTGTCACAGA TGAAGGTGTA
CTGGTTTTCG ACGGACATGG TGCACACCCC ACCCTGGAAG GTCCCAAATT GTATAAACGC
AATGGTTACT ATTACATTTT TGCACCAGCC GGAGGTGTGA GTACGGGTTG GCAACTGGTA
TTGCGCTCCC GGAACATTTA TGGTCCATAT GAAGAGAAAA TAGTGATGGA TCAGGGAAGG
AGTGTTGTGA ATGGTCCGCA TCAGGGAGCC TGGGTAGATA TGCCTTCCGG TAGTAGCTGG
TTCCTGCATT TTCAGGATAA AGGCGCTTAT GGTCGTGTGG TGCATTTGCA AACTATGCAA
TGGGTGAAAG ACTGGCCGGT GATAGGTATG GATGCAGATG GTGATGGGAA AGGAGAGCCG
GTCATGACTT ACCGTAAACC ACTGGCGGGT ATGCCCGTGA TGACACCGCC TGAGTCAGAC
GAATTCAACA GTGCGACATT GGGATTGCAA TGGCAATGGC AGGCTAACCC GGTATCTACC
TGGATGATGA TGTATCCGGC GAAAGGCGTA TTGCGATTGT TTTCTGCGAA AATGCCTGAT
TCTTCGCGTA ACTACTGGCA GGCGCCGAAC CTGTTGTTAC AGAAATTTCC GGCAGATAGC
TTTACTGTGA CTGCTAAATG CACATTTACA CCGAATCCTG CGCTGGAAGG AGAGCGGACC
GGCTTGATTA TTATGGGTGT TGATTATGCG GGTATCTCAT TGATGAAGAA AGATAATCAA
CTGCAACTCT TATATGCGTC CTGTCTGAAA GCGGATAAAG GTGCGGCAGA AGAACAGGAA
GTCCTGAAGA CTATTGATGG TAATACCTGT TGGTTTCGGG TGAAAGTAGA TAAAGGAGCG
GTGTGTCAGT TTAGCTATAG TACCGACGGT ACGAAGTTTG TTGATGCGGG GAAACCGTTT
ACAGCGCAGC CTGGAAGATG GGTAGGAGCC AAGGTAGGGA TCTTTTGTAT GCGTAATACA
CAGATCAATG ACAGCGGGTT TGCGGACTAT GATTGGTTCA GGGTAGATTA A
 
Protein sequence
MKEKLLFILA GLCLPTLFYG QQRSLSWVAD LGNGSYKNPV LNADYSDPDV CRAGNEFYMT 
ASSFNAAPGL PILQSKDLVN WQLVGHALLR QPPFAHFSKV QHGNGVWAPS IRYHKGEFYI
YYPDPDFGIY MIRAKNAAGP WSDPVMVKAG KGLIDPCPLW DDDGKAYLIH AWAGSRAGIK
SILTLNRMNE TGTAVTDEGV LVFDGHGAHP TLEGPKLYKR NGYYYIFAPA GGVSTGWQLV
LRSRNIYGPY EEKIVMDQGR SVVNGPHQGA WVDMPSGSSW FLHFQDKGAY GRVVHLQTMQ
WVKDWPVIGM DADGDGKGEP VMTYRKPLAG MPVMTPPESD EFNSATLGLQ WQWQANPVST
WMMMYPAKGV LRLFSAKMPD SSRNYWQAPN LLLQKFPADS FTVTAKCTFT PNPALEGERT
GLIIMGVDYA GISLMKKDNQ LQLLYASCLK ADKGAAEEQE VLKTIDGNTC WFRVKVDKGA
VCQFSYSTDG TKFVDAGKPF TAQPGRWVGA KVGIFCMRNT QINDSGFADY DWFRVD