| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5507 |
|---|
| Symbol | |
|---|
| ID | 8361684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7025508 |
|---|
| End bp | 7027157 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644967653 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003125137 |
|---|
| Protein GI | 256424484 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000082911 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.00267886 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCT ATATAAATCT TTTTATACTA TTGATTGCAG GGGCTGGTCT GCTGGCTGCC
TGTAATAAAC AACTGGAAGA ATACAATCCT TCCGGACTTA CCGTAGATCA GGTATTCAGT
ACACCGGAGG GTTTTGAAAC ACTGGTGAGT GCCGCCTATT CCTATAACCG CTGGTGGTAT
GGGAAAGAAG AAGGTTACAG TATCTCAGAA ATGGGTACAG ATCTCTGGAC CAGCGGTACC
GGCGATAAAT ATCCTGACCT GACACAGTAT ATCAATCTGC AGGCGAGCAA TGGTGTGATG
AGTGTGTTGT GGAGACAGTT GTACTCCGCA ATCAATCTTT GCAATACCGG TATCGGCAGA
ATCGGTAATG CCGGGTTTAC GGATGAAAAA CGAGCTATGC GTGATGCAGA ACTACATTTC
CTGCGTGCAT TCTATTACTG GCATATCGTA GAAATGTGGG GTGGCGTACA CTTTACTGTT
ACTGAAACGG CGGGAGTAGA AACAACGGCT AACCGTACGC CGGTAGACAC GTTCTATGCA
CAGATCTTTC GCGACCTGGA CATTGCGGTT CAGCACCTGC CGGTCAGTAC CAGCGATTAT
GGCCGTGCTA CCAGACCGGT AGCGCAGGCT TTCCTGGCGC GTATGTACCT GACCCGTGGC
ATGAATGACC GTGCAGCGGC ACTGGCTGAT TCCGTAATCA CGAAATATGG TTTCTCCCTG
GTACCGAAGT ATGCAGACCT GTGGAAGATG GACAACCTGC AAAACAAAGA GATCGTATGG
GCCGTTAACT ATATGAAAAA TCTGGTATTT GACGATAGGA TCGACGCTAC CTTATATCCG
AACGGCCACT CCCGTGGTGC GAATAACGGT CACCTGATGT TTGGTATGAA ATATGACGAT
TTACCGGGTA TGCAGCGCGA CATCCTGAAT GGCCGTCCTT TCAACAGATA TATGCCTACG
CTGTACCTGC TGGACCTGTT CAATGAGAAG GCGGATGCCC GTTATGATGC GACCTTTAAA
AGCGTGTGGC TGTGCAATAA TACCAAGACG GCTCCGGCAG GTATGAAACT GGGCGATACA
GCGGTTATCT GTACCAAATA TGTCGTTTCC AATGCAGACA CCGCTGGTAA GAAATACCGG
GTATATGACA GGAATATCTG TTATTATGCC AACGAGGGTG GTAAAGACCG TACGCGTTAT
GTTTCCTTAC AGAAATTTGA TGACCCGAGC CGCGCTTCCA TGAATGAAGA ACAGAGTGCG
AAAGATGCTT ATATTATCAG ACTGGCCGAA ATGTACCTGA TCGCCGCGGA AGCACAGATC
AAACTGGCTA ATCCCGGGAA GGCGGCAGAA TACATCAACG TGTTGCGTAT GCGTGCAGCT
ATTCCGGGAC ATGAGGCAGA TATGCAGGTA TCTGCCGCAG ATATGACCCT GGAATTTATC
CTGGATGAAA GAGCCCGCGA ACTGGCAGGA GAACAGCTCC GCTGGTTCGA CCTGAAACGT
ACCGGTAAAC TGTCTGCACA TATTATTGCG CATAATCCGG ATGCCGCAAA GAACTTCCGG
GAATTCCACA ATGTACGTCC GATCCCGCAG GACCAGATAG ACGCTGTGAC CAACAAAGCT
GAATTTACAC AGAATCCAAA CTATCAGTAA
|
|---|
| Protein sequence | MKRYINLFIL LIAGAGLLAA CNKQLEEYNP SGLTVDQVFS TPEGFETLVS AAYSYNRWWY
GKEEGYSISE MGTDLWTSGT GDKYPDLTQY INLQASNGVM SVLWRQLYSA INLCNTGIGR
IGNAGFTDEK RAMRDAELHF LRAFYYWHIV EMWGGVHFTV TETAGVETTA NRTPVDTFYA
QIFRDLDIAV QHLPVSTSDY GRATRPVAQA FLARMYLTRG MNDRAAALAD SVITKYGFSL
VPKYADLWKM DNLQNKEIVW AVNYMKNLVF DDRIDATLYP NGHSRGANNG HLMFGMKYDD
LPGMQRDILN GRPFNRYMPT LYLLDLFNEK ADARYDATFK SVWLCNNTKT APAGMKLGDT
AVICTKYVVS NADTAGKKYR VYDRNICYYA NEGGKDRTRY VSLQKFDDPS RASMNEEQSA
KDAYIIRLAE MYLIAAEAQI KLANPGKAAE YINVLRMRAA IPGHEADMQV SAADMTLEFI
LDERARELAG EQLRWFDLKR TGKLSAHIIA HNPDAAKNFR EFHNVRPIPQ DQIDAVTNKA
EFTQNPNYQ
|
|---|
| |